Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00352 ATGTGGCCGGGGGTATCGAGGTCGTTCAACTACAACCTGGCGCCTCACCATGACATCTTCGTGGTGGCGCCTGCTTCCTCCTTCTACCACCACCACAACGACGTCGTCTTATCCGATCCAAACAACAACAACGGTTCCAACAATTCCAACAACCCTGCAACGGCACACGGAGTCAACGTTTTCCCTCTCCTAACCGCCACGCCATGCCTCGAGAGCGAGGGCATAATGGGAAACATCAGTCACCACCGTAACAGAATTCAGTTATGGCAGGAGCACGAGTCTTCTCCGCCGCAGCAGCAACAGGGTCACATGGAGCGTGACACGTGTGGGGATGGGGGCGGGACTAGCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGTAGTCACAGGAGGTGCAGGACGTGTTGCAAGAGTAGGGGTTTTGATTGCTCCACGCACGTGAAGAGCACGTGGGTGCCGGCGTCACGGCGGAGGGAGAGGCAGCTCAAGGGGGTGGCGGCGGCCGGTGCGGCGGTTGGGTCCAATGGGGCCACTTCCGGTGCCAAGAAACCTAGGCTTGTTGCTTCTCAAACTACTTCGCATACTTCAACGTCTAATAATACCACTCCTCCGAGGAGTTTTGACACTGGTTGTAGCCCCCAAGATGTGGGTTTCAAGGAGTCACTACCAAGTCAAGTGCGTGCACCAGCAGTGTTCAAGTGTGTTCGTGTAACATCAGTGGATGATGGTGGGGAAGATGAGTATGCGTATCAAGCAGTTGTGAAGATTGGTGGCCATGTCTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGGACAAAGAAGGGTACCCTAATTTATCTGAATTACATTTGAGTGGTGGTGGTGGTGGAAATGTTACAAGTGGAAGTGATGGTGGTAGAAATGGAATTTCATCTTCATCTCCAATGGTGGATCGTTCTCATGATGTCTATGCAGCTTCAGGTGGAGGGTTGCTACTTGGAGGTTCATCAAACTATGGTAATCATCCAATAAATTAA 1023 0.522 MWPGVSRSFNYNLAPHHDIFVVAPASSFYHHHNDVVLSDPNNNNGSNNSNNPATAHGVNVFPLLTATPCLESEGIMGNISHHRNRIQLWQEHESSPPQQQQGHMERDTCGDGGGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPASRRRERQLKGVAAAGAAVGSNGATSGAKKPRLVASQTTSHTSTSNNTTPPRSFDTGCSPQDVGFKESLPSQVRAPAVFKCVRVTSVDDGGEDEYAYQAVVKIGGHVFKGFLYDQGVEDKEGYPNLSELHLSGGGGGNVTSGSDGGRNGISSSSPMVDRSHDVYAASGGGLLLGGSSNYGNHPIN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00352 340 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 17 335 IPR007818 GO:0003700|GO:0006355
Gma20g00352 340 MobiDBLite consensus disorder prediction 173 213 - -
Gma20g00352 340 MobiDBLite consensus disorder prediction 186 211 - -
Gma20g00352 340 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 224 272 IPR006511 -
Gma20g00352 340 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 17 335 - -
Gma20g00352 340 MobiDBLite consensus disorder prediction 289 312 - -
Gma20g00352 340 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 117 159 IPR006510 -
Gma20g00352 340 MobiDBLite consensus disorder prediction 280 312 - -
Gma20g00352 340 Pfam Domain of unknown function (DUF702) 115 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00352 Gma-Chr20 5679272 5682996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00352 18 319 C2H2 Transcription Factor Family AT5G12330 51.097 1.49e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gma20g00352 DUF702 9.5e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00352 - - gmx:100815750 630.557