Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00338 ATGTTTCTCTTTCCTTCCTATGTGTTACTGCTTCTCTTCCTAATCCTAAACCTACCACACACCACTCACTCTGATGACATTGCCATTTATTGGGGTTCAAATGATGGTGAGGGTAGCTTAGCAGAAACATGTGCAACTGGTTTATATTCCTTTGTAAACATAGCATTCCTTGCACATTTTGGAAATGGTCAAGTCCCTCAAGTGATCCTTGGAAGGCACTGTGACCCTTTTGGGGGAAACTGTTCCGTACTTGGAAGGGACATCAGAAACTGCCAAAAGCAAGGAATCAAAGTGATGCTATCCATTGGAGGTCCAAGCATGAGTTACTCTCTTGTTTCCTCTGAGGATGCTAAGAGTGTTTCTGATTATTTATGGAACAATTTCTTAGGTGGTGGTGGTAACTCATCATCATCTTCAAGTCCACTAGGAGATGTTATATTAGATGGTATAGATTTTGGACTAGGGGGGTCCCTTATGACAAAACATTGGGAAGACCTTGCACATTATCTTAAGTCACATAGAAGAAATGTGTACTTAAGTGCAGCACCTCAATGCATTTTTCCTGATAGTGCACTTGGCAAAGCACTTGAGACTGGACTTTTTGACTATGTTTGGATACAATTCTACAACAATCCTCTATGTCAGTACAATGAAGGTAATGCTTCTAACCTTCTTAATGCATGGAAGCAATGGACAACTTCATTGAAATCAGGGAAAATGTTCTTGGGGTTGCCTGCTTCTCCAACAGCATCTATAGGCGGATATGTTCCTCCCGATTTGTTGATTTCTCGGATCCTGAGTACGGTGAAAACGTCTTCTAACTATGGAGGGATTATGCTTTGGTCAAGGCTTTTTGATAAAGAGAGTGGATATAGTAAAAGGATTTTGGAAAATAGTGTTTGCCTACAGAAAAGAGAAACTGAATGTGGAAGGCACAAGAATGGTTTTATTGAACATTTAGGCTACATGGCTAAAGAGGGTTTTGTAGCTTCTGAAAGCAAGAGCATTGACATGCAGTGTTGTGAGGTTATTTGCAGGAACAATTGTTCCTGTGAGGCTTATGCTCCTCTAAATTTTGTCAATAATACCGGATGCCAGTTTTGGGGTAAAGGAACAAAGTTTATTAAAGATTCTGGTGGAAATTTCAAACGAGTTTACTTTGTCAAACATAAAGTGAACAAGCTGTGGAAATGGATTGTCATTGGTGTTGGAGCAGCTGTTGCAGCACTTGTGTCCTGCTACTTATTCTATGTTTTGAGGAGAAAGTGCAAAGAAGAAGTGGACAGAAAAATGAAGCGAAAGGAACTGTTAGTTGAGGTTGGAGGTAATGCAATGGGAAATTATGGCAAAGCCAAAGGGTCTAAGAAAGAGGGAAAGACAATCAATGAGATTGAAGTATTCAGTTTGGAAAATATCATTGTTGCCACACACAATTTCTCCCCTGATAATAAGCTAGGAGAGGGTGGTTTTGGTCCTGTCTATAAGGGAACATTAATTGATGGACAAGAAATTGCAATAAAAAGACTTTCTAAAAGTTCAGGCCAAGGCCTAGTAGAGTTCAAGAATGAAGCTAAGATTATGGCCAAACTTCAGCACACTAATCTTGTGAGGCTTTTGGGGTTCTGCATCGACAGTGATGAAAGAATACTTGTATATGAATACATGTCTAACAAGAGCTTAGATCATTATTTATTCGATGCAAGTAGAAATAATGAGCTAGAATGGAATAAACGTCTTAAAATCATTGAAGGCACGGCTCAAGGACTTGTGTATTTGCACAGATATTCAAGACTAAAGGTGATACATAGGGATTTGAAGGCAAGCAATATATTGCTTGATGAAGAAATGAATCCAAGAATCTCTGACTTTGGCTTAGCTAGAATATTTGGATTGAAAGGATCTGAAGAAAACACCAGTAGAGTTGTTGGAACATATGGTTACATGTCTCCAGAATATGCAATCAATGGTGTTGTCTCAGTCAAAACAGATGTATACAGTTTTGGTGTGCTGCTACTTGAGATTATTAGTGGGATGAAGAACAATAGTTGCATCCACTCAAATCATCCATTCAATCTCATAGCACATGCCTGGCAGCTATGGAACCAAGGGAGAGCTCTAGAGCTGATGGATCCATCACTAAATGAATCATTCAGTTCTGATGAAGTAGAAAGATGCATTCAGATTGGACTCTTATGCGTACAAGATCATGCAATAGAAAGACCTACCATGGAAGATGTTGTTACTTTCCTATCAAATGATACCACCCAACTTGGTCAACCAAAGCAGCCAGCATTCTTCATGTATGTGGTTGCTGGAGAGTCAGGATGTCCTAATAATAGCAAACAAGAAAATTATTCACTAAATCATTTATCAATCTCCACTGCTTATGGGAGATAA 2397 0.3913 MFLFPSYVLLLLFLILNLPHTTHSDDIAIYWGSNDGEGSLAETCATGLYSFVNIAFLAHFGNGQVPQVILGRHCDPFGGNCSVLGRDIRNCQKQGIKVMLSIGGPSMSYSLVSSEDAKSVSDYLWNNFLGGGGNSSSSSSPLGDVILDGIDFGLGGSLMTKHWEDLAHYLKSHRRNVYLSAAPQCIFPDSALGKALETGLFDYVWIQFYNNPLCQYNEGNASNLLNAWKQWTTSLKSGKMFLGLPASPTASIGGYVPPDLLISRILSTVKTSSNYGGIMLWSRLFDKESGYSKRILENSVCLQKRETECGRHKNGFIEHLGYMAKEGFVASESKSIDMQCCEVICRNNCSCEAYAPLNFVNNTGCQFWGKGTKFIKDSGGNFKRVYFVKHKVNKLWKWIVIGVGAAVAALVSCYLFYVLRRKCKEEVDRKMKRKELLVEVGGNAMGNYGKAKGSKKEGKTINEIEVFSLENIIVATHNFSPDNKLGEGGFGPVYKGTLIDGQEIAIKRLSKSSGQGLVEFKNEAKIMAKLQHTNLVRLLGFCIDSDERILVYEYMSNKSLDHYLFDASRNNELEWNKRLKIIEGTAQGLVYLHRYSRLKVIHRDLKASNILLDEEMNPRISDFGLARIFGLKGSEENTSRVVGTYGYMSPEYAINGVVSVKTDVYSFGVLLLEIISGMKNNSCIHSNHPFNLIAHAWQLWNQGRALELMDPSLNESFSSDEVERCIQIGLLCVQDHAIERPTMEDVVTFLSNDTTQLGQPKQPAFFMYVVAGESGCPNNSKQENYSLNHLSISTAYGR 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00338 798 CDD STKc_IRAK 485 750 - -
Gma20g00338 798 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 182 766 - -
Gma20g00338 798 PANTHER OS01G0783800 PROTEIN 182 766 - -
Gma20g00338 798 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 25 302 IPR001223 GO:0005975
Gma20g00338 798 Pfam Glycosyl hydrolases family 18 27 282 IPR001223 GO:0005975
Gma20g00338 798 SMART serkin_6 479 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00338 798 Gene3D Transferase(Phosphotransferase) domain 1 555 763 - -
Gma20g00338 798 Gene3D Glycosidases 25 299 - -
Gma20g00338 798 CDD GH18_hevamine_XipI_class_III 26 295 IPR045321 -
Gma20g00338 798 SUPERFAMILY (Trans)glycosidases 22 294 IPR017853 -
Gma20g00338 798 ProSiteProfiles Protein kinase domain profile. 479 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g00338 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Gma20g00338 798 Gene3D Phosphorylase Kinase; domain 1 453 554 - -
Gma20g00338 798 Pfam PAN-like domain 330 369 IPR003609 -
Gma20g00338 798 Pfam Protein tyrosine and serine/threonine kinase 482 749 IPR001245 GO:0004672|GO:0006468
Gma20g00338 798 SUPERFAMILY Protein kinase-like (PK-like) 462 769 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00338 Gma-Chr20 5078037 5082142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00338 444 787 Receptor kinase-like Gene Family AT4G23150 52.616 1.21e-122 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma20g00338 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00338 - - gmx:100809337 1609.35