Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00335 ATGTCAGAGGTTAAGGACCCTGCGATAAAGCTTTTTGGAAGGACAATTTCGCTGCCACACACACACATCAATGATTCTTTTTCTTCTGCTTCTGCTTCAGGACCTGCTTGTGCCCCTTCATCTTCCTCTTCTCCTCGTGAAGTTACCTCTTCTGCAACACAACAACAGCATGAACCTGAGGAACCATCAAGGAAAGTACTTACCTCATCACAAGATGATGATGATGCCTCACATCAAACCACAGAGGATTTGAAATCTTCCACAACATCTTCAGGCATATTTGAGAATCCTAAGACTCCCTCAGCAGAAACCGAGACATCAATACCGAAATCCTCCACAAATGGAGAAAAAAGCGAGAAAAGTGCTTCTGAAGAAAAAACACTAAAGAAACCTGACAAGGTACTTCCATGCCCGCGATGCAATAGCATGGAAACCAAATTCTGTTACTACAACAACTACAATGTCAACCAACCTCGCCATTTCTGCAAGAACTGCCAGAGATACTGGACAGCTGGAGGTACAATGAGAAATGTGCCGGCAGGAGCCGGTCGTCGAAAGAACAAGAATTCCTCGGCGACCGTGTCACATTACCGGCACATAATGTTCTCTGAAGGGCTTCAGGGAGCCACACTCAATGCCCCCAATGGATTGCATAATGCTGTTATGACCTTTGGTCCTGATTCTCCCCTTTGTGATACGATGGCATCTATGTTGAACATTGCTGAGAGAGCACAAAGTTGTGTTCCAAATGGGTTTCATGTAACTGAGCCAAATAGTTTTGTTTCCTATAGAAAGGAGGAGGAGGAGGAGGATGGTACTAGTGGTCACTCTACTGGAGTTAATTCTGTTGCAACAACATCAACTTTAAGCCATAGTGGCTCACATGAATCATTGGATAAAAAAGTTGTTGAAGGTTTCACTCCTCAATTTCCATACTTTCCAAGTGCACCTTGGCCTTATCCTATCCCTCCTCCTACATTTTTCCCACAAGGGTACCCTTTATCATTGTATACTACACCTGCATATTGGAGTTATATGCCACCCTCTTGGAATAACAATATATCAGCTATCTCACCCCAATCTTCTGTTAACAACTCTGTCTCTAACCCTACTTTGGGGAAACACTCAAGGGATGGAAACATCATTGCTTCATCCAATTCACAAAGAGAAATGCATGACATGGAGCACAACAGCTCAGAACACAATGCCTTGATCCCCAAGACACTTAGAATTGATGACCCTAGAGAAGCTGCAAAGAGTTCCATTTCCATGTGGTCAAAACTAGGGATCAAGAATGATGACAAGGCCAGTTCCGGAGGCCTTTTCAAGGCTTTTCCATCATCCAAGGGAAATGATATCAATCATCAAATGGTTGAAGCATCATCGCCGGTGTTGCAGGCCAACCCTGCGGCTCTATCGCGGTCTCTTACCTTCCGCGAGCAGACCTAA 1449 0.4438 MSEVKDPAIKLFGRTISLPHTHINDSFSSASASGPACAPSSSSSPREVTSSATQQQHEPEEPSRKVLTSSQDDDDASHQTTEDLKSSTTSSGIFENPKTPSAETETSIPKSSTNGEKSEKSASEEKTLKKPDKVLPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPAGAGRRKNKNSSATVSHYRHIMFSEGLQGATLNAPNGLHNAVMTFGPDSPLCDTMASMLNIAERAQSCVPNGFHVTEPNSFVSYRKEEEEEDGTSGHSTGVNSVATTSTLSHSGSHESLDKKVVEGFTPQFPYFPSAPWPYPIPPPTFFPQGYPLSLYTTPAYWSYMPPSWNNNISAISPQSSVNNSVSNPTLGKHSRDGNIIASSNSQREMHDMEHNSSEHNALIPKTLRIDDPREAAKSSISMWSKLGIKNDDKASSGGLFKAFPSSKGNDINHQMVEASSPVLQANPAALSRSLTFREQT 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00335 482 MobiDBLite consensus disorder prediction 389 412 - -
Gma20g00335 482 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 482 - -
Gma20g00335 482 PANTHER CYCLIC DOF FACTOR 2 1 482 IPR045174 GO:0003700|GO:0006355
Gma20g00335 482 MobiDBLite consensus disorder prediction 264 296 - -
Gma20g00335 482 MobiDBLite consensus disorder prediction 58 81 - -
Gma20g00335 482 ProSiteProfiles Zinc finger Dof-type profile. 135 189 IPR003851 GO:0003677|GO:0006355
Gma20g00335 482 MobiDBLite consensus disorder prediction 19 57 - -
Gma20g00335 482 Pfam Dof domain, zinc finger 132 189 IPR003851 GO:0003677|GO:0006355
Gma20g00335 482 ProSitePatterns Zinc finger Dof-type signature. 137 173 IPR003851 GO:0003677|GO:0006355
Gma20g00335 482 MobiDBLite consensus disorder prediction 16 135 - -
Gma20g00335 482 MobiDBLite consensus disorder prediction 82 116 - -
Gma20g00335 482 MobiDBLite consensus disorder prediction 388 412 - -
Gma20g00335 482 MobiDBLite consensus disorder prediction 361 380 - -
Gma20g00335 482 MobiDBLite consensus disorder prediction 275 293 - -
Gma20g00335 482 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00335 Gma-Chr20 4942519 4945787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00335 4 480 C2C2-Dof Transcription Factor Family AT5G39660 38.645 8.60e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma20g00335 zf-Dof 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00335 - - gmx:100807731 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00335 20 4942519 4945787 Gma06g01750 06 17801036 17804323 ECH
Gma20g00335 20 4942519 4945787 Gma04g01634 04 44438739 44441671 ECH
Gma20g00335 20 4942519 4945787 Gma05g00253 05 2303134 2305993 ECH
Gma20g00335 20 4942519 4945787 Gma17g00950 17 8101698 8105003 ECH
Gma20g00335 20 4942519 4945787 Gma20g00335 20 4942519 4945787 ECH
Gma01g00454 01 5866252 5870143 Gma20g00335 20 4942519 4945787 ECH