Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00330 ATGAAGGCATGGCCAGCTAGGGTGATATACCCTTCTTCACAAGAGAACACAAATAGCCTCACTAGATACCCTTCTTCTTCCTCCCACTCTTCTTCTCCTCCTTCAATGGGAATGGTCTATGCCGACATGGACTCTCTCTCTCTTTGTTCCCACTACGGTACTGTGGTTTCTTCTCATCACCAAGATTGCTATGTCTCCAACGGGGGCACAAACTGGGGTTTTCCCTTCATGAGGGAATGCCCCAACAACAGTGATGATGTTGCTGAAGAAGAAGAGGGTAAAGGCTCTGATAGCAGTACTGGTGAAGACAGTGACAAAGTTAACCACCATGCTAATAACTCTAACGATGAGAACAACCCTAATGAGAATAATTCTAATAGTGGCGGTTCGGGGCATTCCAAGCTTTGTGCTAGAGGGCATTGGAGACCAGCAGAAGATTCCAAACTCAAGGAGCTTGTTGCTCTTTATGGCCCTCAGAACTGGAACCTCATTGCTGAGAAGTTAGAAGGAAGATCAGGAAAGAGTTGTAGGTTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAATAGGAGGGCATTCAGTGAAGAAGAAGAAGAGAGGCTGATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCAGGGAGAACAGATAATGCTGTGAAGAATCACTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAGTCCAGTGCCTACAGGAGAAGAAGGCTGAGCCAATCTTCTTCTGTTTACAGAAGAGTGGATGAAATTAACACAACAATAACAACGACAAACAGCATTGTTGTCTCCAGAGACACAGAACAACAAGCACCACCACCACCACCCTATTGTGTCAATCTCTCAAATAATGGAGGACTTGCCAACAACATCATCAACAACAACAACAACATTAACATGATGTCTAGTTTTCCATATGCTGCTGCATCCTTCCATGGAGGAGTAGTGCCTTCTTCTGGTGGGATTGAATTTGGCTTAAATTCCTCACCCCACATGACTACAGCCAAAGAACCATTCTCAACCACCAAGCTGGCCCCTCCTCATATTGCCTTGTATCCTCAACAAACATCACTTGATTTCTTTTCAGGTGTTAGAAGCAGCAGTGACATGGTGGGAGAGTATTTTGGCCAGAACCTTCATCACCAACAACAACAACCTTCATCTGGTTTCTACCCTCAATACCCCCAATATGTGATGCTAATGAATCACCACCACCAACAAAACAATCACAACAACTTTTACGGTTTCTCAAATTCCACATCACAGATTTTATTAGGCCACAGTGAAGCCTCACTATCATCATCAGTGGCAGCAGAAGAACACAGAGATCATCAAAACTTGAGCAGTGATCAGTGCCCCCCAGATGCAACAACAACAATTCCACCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACTTGA 1461 0.4463 MKAWPARVIYPSSQENTNSLTRYPSSSSHSSSPPSMGMVYADMDSLSLCSHYGTVVSSHHQDCYVSNGGTNWGFPFMRECPNNSDDVAEEEEGKGSDSSTGEDSDKVNHHANNSNDENNPNENNSNSGGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSSSVYRRVDEINTTITTTNSIVVSRDTEQQAPPPPPYCVNLSNNGGLANNIINNNNNINMMSSFPYAAASFHGGVVPSSGGIEFGLNSSPHMTTAKEPFSTTKLAPPHIALYPQQTSLDFFSGVRSSSDMVGEYFGQNLHHQQQQPSSGFYPQYPQYVMLMNHHHQQNNHNNFYGFSNSTSQILLGHSEASLSSSVAAEEHRDHQNLSSDQCPPDATTTIPPPFIDFLGVGAT 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00330 486 ProSiteProfiles Myb-like domain profile. 185 235 IPR001005 -
Gma20g00330 486 SMART sant 137 186 IPR001005 -
Gma20g00330 486 SMART sant 189 237 IPR001005 -
Gma20g00330 486 MobiDBLite consensus disorder prediction 113 132 - -
Gma20g00330 486 MobiDBLite consensus disorder prediction 447 476 - -
Gma20g00330 486 Gene3D - 192 261 - -
Gma20g00330 486 Pfam Myb-like DNA-binding domain 138 184 IPR001005 -
Gma20g00330 486 Pfam Myb-like DNA-binding domain 190 233 IPR001005 -
Gma20g00330 486 ProSiteProfiles Myb-like domain profile. 138 184 IPR001005 -
Gma20g00330 486 Gene3D - 138 189 - -
Gma20g00330 486 MobiDBLite consensus disorder prediction 10 35 - -
Gma20g00330 486 PANTHER MYB TRANSCRIPTION FACTOR 36 486 - -
Gma20g00330 486 MobiDBLite consensus disorder prediction 83 112 - -
Gma20g00330 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 239 IPR017930 -
Gma20g00330 486 SUPERFAMILY Homeodomain-like 138 231 IPR009057 -
Gma20g00330 486 PANTHER MYB PROTEIN-RELATED 36 486 - -
Gma20g00330 486 MobiDBLite consensus disorder prediction 1 36 - -
Gma20g00330 486 CDD SANT 141 182 IPR001005 -
Gma20g00330 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 184 IPR017930 -
Gma20g00330 486 CDD SANT 192 232 IPR001005 -
Gma20g00330 486 MobiDBLite consensus disorder prediction 83 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00330 Gma-Chr20 4865707 4867644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00330 30 250 MYB Transcription Factor Family AT1G69560 53.942 9.13e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma20g00330 Myb_DNA-binding 2.3e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00330 20 4865707 4867644 Gma20g00330 20 4865707 4867644 ECH