Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00327 ATGGCTCTCATTGGGTTGCTCTTGATGGGTTTTCTCACAATGTTCTCCTCTGCTCATGCCTATGGTGGAGGGTGGACTAATGCTCATGCCACCTTCTATGGAGGGAGTGATGCATCTGGGACAATGGGTGGGGCATGTGGGTATGGGAATCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTCTAAGCACTGCACTGTTCAACAATGGCTTGAGCTGTGGCTCTTGCTATGAGATTAGGTGTGCCAATGACCACAGGTGGTGCCTTCCAGGTTCTATTGTGGTCACTGCCACCAATTTCTGTCCTCCAAACAATGCCTTGCCCAACAACAATGGTGGCTGGTGTAACCCTCCTCTCCAACACTTTGACCTAGCTCAACCTGTCTTCCTACGCATTGCTCAGTACAAAGCTGGAATTGTCCCTGTCTCCTACAGAAGGGTGGCTTGTAGGAGGAAGGGAGGGATCAGGTTCACAATCAATGGACACTCCTACTTCAACCTAGTTCTCATCACAAACGTTGGTGGTGCTGGTGATGTGCATTCTGTTTCAATCAAGGGTTCAAGAACTGGTTGGATGCCAATGTCAAGAAACTGGGGTCAGAACTGGCAGAGCAATAACTACCTCGATGGTCAAAGCCTCTCCTTTAAGGTCACCACAAGTGATGGCAGAACTATTGTGTCCAACAATGTTGCCCCATCTGGCTGGTCCTTTGGCCAAACCTACACTGGTGCTCAATTCCGCTAG 747 0.4953 MALIGLLLMGFLTMFSSAHAYGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCANDHRWCLPGSIVVTATNFCPPNNALPNNNGGWCNPPLQHFDLAQPVFLRIAQYKAGIVPVSYRRVACRRKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWMPMSRNWGQNWQSNNYLDGQSLSFKVTTSDGRTIVSNNVAPSGWSFGQTYTGAQFR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00327 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Gma20g00327 248 SUPERFAMILY Barwin-like endoglucanases 24 173 IPR036908 -
Gma20g00327 248 PANTHER EXPANSIN-A15 13 248 IPR002963 GO:0009664
Gma20g00327 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Gma20g00327 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Gma20g00327 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Gma20g00327 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Gma20g00327 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Gma20g00327 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Gma20g00327 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Gma20g00327 248 SMART dpbb_1 60 145 IPR007112 -
Gma20g00327 248 Gene3D - 155 247 IPR036749 -
Gma20g00327 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Gma20g00327 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Gma20g00327 248 PANTHER EXPANSIN-A10 13 248 - -
Gma20g00327 248 Gene3D - 12 151 IPR036908 -
Gma20g00327 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Gma20g00327 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Gma20g00327 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Gma20g00327 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Gma20g00327 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Gma20g00327 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Gma20g00327 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Gma20g00327 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Gma20g00327 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Gma20g00327 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00327 Gma-Chr20 4783736 4785890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00327 1 248 Expansin Gene Family AT2G03090 80.645 7.41e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00327 - - gmx:100527059 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00327 20 4783736 4785890 Gma06g01752 06 17836215 17838699 ECH
Gma20g00327 20 4783736 4785890 Gma04g01631 04 44363370 44366477 ECH
Gma20g00327 20 4783736 4785890 Gma17g00953 17 8120474 8123768 ECH
Gma20g00327 20 4783736 4785890 Gma20g00327 20 4783736 4785890 ECH
Gma02g00998 02 10683705 10686005 Gma20g00327 20 4783736 4785890 ECH
Gma01g00461 01 5991245 5993454 Gma20g00327 20 4783736 4785890 ECH