Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00304 ATGTTGCATAAGAAGAAGAATGGCAGCGAAAACGGCAACAACAAGGAGAACGAAGACACCACCATCATCGATGTCTTGAAGGTCGAAGCGCACTACGACGATTGCGCTCCACTTTGTGGCATAGAAAGCTTTTATTTTGATTATAAGTTTAGATATCCTGAGAATTCTGCTCCTGGTCAACTCCCAAGAATAGTGGATGTAATTGCAGAAGACGACCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGGATATATAAGGCTCTTGCAAGGAAAAGGCAGACTGTTCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATACACCAATCTACAGTGTTGAAGATGTCAAAAACATTAAAGAGATAGCTGCAAGAGATGATGCATTTGATCTGCTAAGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGTGGGGTGGAGAAGAATTTAAAGAATGGCACTCACTTGCGAGGTGACATCAACATGATGATGGTTGGCTATCATTCGTCATGGACTATATATATGGAACTAAATTCAAGTTCAAATGCAAAGTTACTCAATCCCACAGAACTTTTAGGGAACATTGTGGTTGAACATGATTATGCTGAGTGCACTGGATTTTCTATTCAAGCTTTAGTTTTGTTTAAGAAGCTATATCCAAGGCATAGGGAGACAGATAAAGAATTCCATTGCCAATGCAGTTCATGGTATGGAAGTTGGGGAGTTTGCTACATTTATGGCACTTGGTTTGCACTTCGTGGTCTTGCAGCGGTGGGTAAAACTTACACTAATTGTGCTGCCATTCGCAAAGCCGTTAAAATTCTACTTTCAACACAGAAAAAGGATGATCAACTTGATAACAATGACTTTGGTGGAAATAACATTCCAGAATCTTATGGCAACATCTCAAAATTGTCAAAATTGTAA 981 0.3955 MLHKKKNGSENGNNKENEDTTIIDVLKVEAHYDDCAPLCGIESFYFDYKFRYPENSAPGQLPRIVDVIAEDDLVDSCKPGDRVAIVGIYKALARKRQTVLIANNVSLLNKEANTPIYSVEDVKNIKEIAARDDAFDLLSNSLAPSIYGHSWIKKAVVLLMLSGVEKNLKNGTHLRGDINMMMVGYHSSWTIYMELNSSSNAKLLNPTELLGNIVVEHDYAECTGFSIQALVLFKKLYPRHRETDKEFHCQCSSWYGSWGVCYIYGTWFALRGLAAVGKTYTNCAAIRKAVKILLSTQKKDDQLDNNDFGGNNIPESYGNISKLSKL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00304 326 Pfam MCM P-loop domain 121 184 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gma20g00304 326 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 200 300 IPR008930 -
Gma20g00304 326 Pfam Squalene-hopene cyclase C-terminal domain 252 301 IPR032696 -
Gma20g00304 326 Gene3D - 186 312 - -
Gma20g00304 326 SUPERFAMILY Nucleic acid-binding proteins 52 97 IPR012340 -
Gma20g00304 326 PANTHER DNA HELICASE 52 187 - -
Gma20g00304 326 ProSiteProfiles MCM family domain profile. 134 184 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gma20g00304 326 Gene3D - 116 185 IPR027417 -
Gma20g00304 326 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 52 187 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gma20g00304 326 Pfam MCM OB domain 53 91 IPR033762 -
Gma20g00304 326 Gene3D - 50 112 IPR012340 -
Gma20g00304 326 SMART mcm 4 298 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00304 Gma-Chr20 4157044 4161865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00304 53 184 Core DNA Replication Machinery Family AT5G46280 77.143 1.01e-68 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00304 K02541 - gmx:100811545 241.121