Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00303 ATGCATTTTGTCCAAGGGCCCATTTATATTGTGAAGCGTCAGAGGTCCCTCAGCCTAGTCATTAGTCCCTCATTCGCGTTGCTTTTGATCTCCTTGTGTAAACCCTTGTCGTCATCGCGCTGTGGCCACCGCCGTCACCATCGCACTGGTTCGTGGCCTCGTCAGTGGAACCTGTGGCTGGAATCGTTTGGTATTTCTGTGAGTCACTCACTCATGTCGATCTATCACTTCCTTCACCATGGTCGAGTCCCTCGTCTccctcctcacattccacgccctcctctcttctccctcctcacattccacgGTGACTCCCTCATCCAGTCTAACGCTGACCACGACCTCCTCATCGCCTTCGAGACTGGCGACGCTGAGCTCCTCTACGAGATCCGCCTCCATAGCGCCTCCAGTAAGGAGTATAGGAACCCGTCGGAGCAGAGGACTTTGGCGTTGGAGCAGGCGCTAGGCGTGGCGGAGACAAAGGCGGAAGCGAATGTGATTTTGGAGGGGTTGGGGGGGAAGGGTGAGGAGGGGGATAAGGTGGGTGAAGGGGAGGCTGCGGCGCGTGTTCCGGTGGTGAGGCTGAGGATTGGGGAGGTGGCGGAGACGAGTTCGATGGTGTTGTTGCCGATCTCCGCGAAGGAGGAGAAGAAGATTTTGGAGGCATGCAGAAGAAGAATTGAAGATAGGCTAGGGAAATTTTCTTTGATTCAGTTATCAGAAGAGCATCCTAATGCAATAGCTATGTTCTACGAACCTCCAGAAAAACAGCAGAAAGATTCTAGTTTCTGGGCACTTCTATATGTGGGTTTGGGTATAGTTACTCTAGTGATTATACCAGTGCAAAATTACTTCTTTGGCATTGTTGGTGGAAAATTAATAGAAAGAATTCGTTTACCGACATTTGAAAAGGTTGTGCACCAAGAAATCAGTTGGTTTGATGATTCTGCAAATTCAAGGTCACATGTTAACATGACATTCACTGCTAATTGGATTCTTGCTTTAATAATTGTAGCTATGTCACCCTTGATCTTTATACAACGATTTCTTCAGATGAAGTTTCTTAAAGGATTCAATGGAGATGCCAAGGCAAAGTATGAAGAGGCAAGTCAAGTGGCAAATGATGTTGTTAGTAGCATCAGAACCATTGCATCATTCTGTGCCGAATCAAAGGTGATGGATAGGTACAAGAAGAAATGTGATATTGAATTTATACTGGCTTTGGGGCTTGTCTTATTTTGTTTAACAATCACAGCCATAGGCATTTCCCAGACTAGTGTCTTAGCACCAGACACTAACAAGGCCAAAGATTCCGCAGCTTCAATATTTAAAATTCTTGACAGTAAACCTACCATTGACTCCAGCAGCAATGGGGGTAGAACACTAGAAGCCGTTTTTGGTGATATTGAACTTCAACATGTCAGTTTTAATTACCCAACTAGGCCTCATATTCAAATTTTCAAAGATTTGTGTCTAAGCATTCCAGCTGGAAAGACTGTTGCATTGGTTGGAAAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTGGAGAGATCAGTTAGTATACTCTTATGA 1578 0.4398 MHFVQGPIYIVKRQRSLSLVISPSFALLLISLCKPLSSSRCGHRRHHRTGSWPRQWNLWLESFGISVSHSLMSIYHFLHHGRVPRLPPHIPRPPLFSLLTFHGDSLIQSNADHDLLIAFETGDAELLYEIRLHSASSKEYRNPSEQRTLALEQALGVAETKAEANVILEGLGGKGEEGDKVGEGEAAARVPVVRLRIGEVAETSSMVLLPISAKEEKKILEACRRRIEDRLGKFSLIQLSEEHPNAIAMFYEPPEKQQKDSSFWALLYVGLGIVTLVIIPVQNYFFGIVGGKLIERIRLPTFEKVVHQEISWFDDSANSRSHVNMTFTANWILALIIVAMSPLIFIQRFLQMKFLKGFNGDAKAKYEEASQVANDVVSSIRTIASFCAESKVMDRYKKKCDIEFILALGLVLFCLTITAIGISQTSVLAPDTNKAKDSAASIFKILDSKPTIDSSSNGGRTLEAVFGDIELQHVSFNYPTRPHIQIFKDLCLSIPAGKTVALVGKSGSGKSTVISLLERSVSILL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00303 525 Gene3D - 459 519 IPR027417 -
Gma20g00303 525 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 264 420 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma20g00303 525 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 245 323 - -
Gma20g00303 525 CDD ABC_6TM_Pgp_ABCB1_D2_like 245 452 - -
Gma20g00303 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 521 IPR027417 -
Gma20g00303 525 SUPERFAMILY ABC transporter transmembrane region 258 450 IPR036640 GO:0005524|GO:0016021
Gma20g00303 525 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 245 323 IPR039421 -
Gma20g00303 525 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 411 519 IPR039421 -
Gma20g00303 525 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 325 401 - -
Gma20g00303 525 Pfam ABC transporter 488 520 IPR003439 GO:0005524
Gma20g00303 525 Gene3D ABC transporter type 1, transmembrane domain 325 401 IPR036640 GO:0005524|GO:0016021
Gma20g00303 525 Gene3D ABC transporter type 1, transmembrane domain 202 323 IPR036640 GO:0005524|GO:0016021
Gma20g00303 525 Gene3D ABC transporter type 1, transmembrane domain 411 458 IPR036640 GO:0005524|GO:0016021
Gma20g00303 525 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 325 401 IPR039421 -
Gma20g00303 525 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 411 519 - -
Gma20g00303 525 Pfam ABC transporter transmembrane region 258 318 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma20g00303 525 Pfam ABC transporter transmembrane region 324 402 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00303 Gma-Chr20 4117696 4121179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00303 247 519 Calmodulin-binding Proteins AT2G36910 31.143 6.35e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00303 K05658 - gmx:100801771 432.95