Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00249 ATGGAGGAGAGGAAGAAGTATGTGTGCAAGTATTGCAGCAAGAGCTTTCCTTGTGGGAAGTCTCTTGGGGGTCACATCAGGACCCATATGATGACTGAAGAAAGAAACAACAACAACAATGTTAATGTTGTTGTTGATGGTGCTGATGACAAGGACAACATCAACAGGTTCATCAAGTTGGGTGGTACTGTGATGAGGAATAATAATAACAAGAAGAGAGATTTATCATGGTGTGAAGATAGCAATAACAATCCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCTTCTGGTGGTGCTGCCAATGCCAACAACAATGAACAACAACAACAGAATAAAGAGGATAAGAGATTCTGCAAAGAATGTGGGAAAGGTTTTCCATCACTGAAGGCTCTCTGTGGCCACATGGCTTGTCACTCAGAGAAAGAGAAGAGAACAACAGCAACAACAACCATCAAGTTTGAAGAGAAATTGGTTAGGGATAGTCATTCTGACACTGAGACTTCAACTCATCCAAGGAGATCCAAGAGAATGAGGGTGAAGAAGACCATTAAACTTTCCAATCACAACAACCCTTTTTCTTTTTCTTCTTCTCCTTCTTCTTCTGGTGTTGTTCCTTTGGTCAATAATGGTTCTTCACCTGTGTCCGAGGTGGAGCAGGAGGAACAAGAAGAGGTGGCAAGGTGCTTGATGCTGTTGTCTAGAGATTCTGGCAGCTTCAACTTCAAGAGTGGTCGTTTTGCTTCTGTTACTGAATTTTCTGATAACAATTCGGTTATTCTAGAAGCAAAATCATCCTCTCCTGATACCCTGATTGGTGTCATCAGCTATGGTAATAACAACAACAACAACAACTTTGTCTCTAATAATAATCATGCTTATGATCTTGTGGAGAAGAAGTTGCTTAAGGTTAAGAATATCAAGTTTAAGTCGGTTGAGTTTGGTGCTTCTGATAATTATTCAGGTGCTAGAGTTTTCAGATATGGTCCAAAAACCAAAATGGTAGACTCAGATTTCTCAAATGATGAACTCAAGCGGTCAAAGTTGGGGGACAAGTCAAGCAAGTACACTGCATCTGTAGTGAAGAAATTGGTGATGGAGGATTTGGATTATGATAGAACATATGGAGGAACTACAAGGAAGTTTGATTCAAGAAAGAGGGGCAACTATGATTTAGTTGATGTTTCTAGCAAGAATGGAACAAAAGGGTGGAAGTATGAGTGTTTTGAAGGTGAAAGGGACAATAATAGTTCTTATGAATACTCAATAGATGATGAGAGTGATGAAAACAGTTCAGAGACTGAATCTTTTCCTGCTCCAGGGTCTCATCATAAGAGTAAGGCTCTCAATGGAAAGAAGTGCACCACAAATGCCAAGAAGAAGAAGTTGAAGCCTTCTAAGAAAAGCAAGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAAGTCAGGCCAAGCCTTAGGGGGTCACAAAAGATCACATTTCATTGGAGGTTCTGAAGAAAACACTGTTCTGATCAAACAAGTTGTTCCTAATTTCCTTATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1596 0.3997 MEERKKYVCKYCSKSFPCGKSLGGHIRTHMMTEERNNNNNVNVVVDGADDKDNINRFIKLGGTVMRNNNNKKRDLSWCEDSNNNPIYGLRENPKKTMRFVHSSGGAANANNNEQQQQNKEDKRFCKECGKGFPSLKALCGHMACHSEKEKRTTATTTIKFEEKLVRDSHSDTETSTHPRRSKRMRVKKTIKLSNHNNPFSFSSSPSSSGVVPLVNNGSSPVSEVEQEEQEEVARCLMLLSRDSGSFNFKSGRFASVTEFSDNNSVILEAKSSSPDTLIGVISYGNNNNNNNFVSNNNHAYDLVEKKLLKVKNIKFKSVEFGASDNYSGARVFRYGPKTKMVDSDFSNDELKRSKLGDKSSKYTASVVKKLVMEDLDYDRTYGGTTRKFDSRKRGNYDLVDVSSKNGTKGWKYECFEGERDNNSSYEYSIDDESDENSSETESFPAPGSHHKSKALNGKKCTTNAKKKKLKPSKKSKDHECPICYKIFKSGQALGGHKRSHFIGGSEENTVLIKQVVPNFLIDLNLPAPVDE 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00249 531 SMART c2h2final6 7 29 IPR013087 -
Gma20g00249 531 SMART c2h2final6 478 500 IPR013087 -
Gma20g00249 531 SMART c2h2final6 123 145 IPR013087 -
Gma20g00249 531 MobiDBLite consensus disorder prediction 194 223 - -
Gma20g00249 531 MobiDBLite consensus disorder prediction 165 179 - -
Gma20g00249 531 MobiDBLite consensus disorder prediction 165 184 - -
Gma20g00249 531 Gene3D Classic Zinc Finger 1 54 - -
Gma20g00249 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Gma20g00249 531 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Gma20g00249 531 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 531 - -
Gma20g00249 531 Pfam C2H2-type zinc finger 478 500 - -
Gma20g00249 531 Pfam C2H2-type zinc finger 125 147 - -
Gma20g00249 531 Pfam C2H2-type zinc finger 7 30 - -
Gma20g00249 531 SUPERFAMILY beta-beta-alpha zinc fingers 5 145 IPR036236 -
Gma20g00249 531 MobiDBLite consensus disorder prediction 452 473 - -
Gma20g00249 531 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Gma20g00249 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Gma20g00249 531 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 531 - -
Gma20g00249 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 478 500 IPR013087 -
Gma20g00249 531 ProSitePatterns Zinc finger C2H2 type domain signature. 480 500 IPR013087 -
Gma20g00249 531 MobiDBLite consensus disorder prediction 423 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00249 Gma-Chr20 3014083 3015678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00249 5 531 C2H2 Transcription Factor Family AT1G26610 39.170 2.33e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma20g00249 zf-C2H2_6 7.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00249 - - gmx:100817538 933.324