Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00228 ATGATGTTGAATTCTGCGGATAGAGAAGAGGCAAGTAGACCAAGGAGTGCTGTTGGATTGGCATCATGCTTCACAAGGGATGTGATAGGGTTGGAACCTCGAGGGCAAGCTGTTGTTCTTGTCTTAATTGAATTTTCTGATGGCTGTACTATGGAAGAAGTTTGTCTGAATAGTGAGCCACTTTTTGATGAAAGTGATGAGGTTGATGTTGAGGGGAACTCTTCTGTAGCAGAACATGATCTTGAATCTTTAAACTCACAACCGAATAACTCTCCACTTCCAACTGTGGGTCTGgagtttgattcttttgatgaagtttacaacttctacaatatctatgcaaaggaacaaggctttggtatcagaGTGAGCAATTCATGGTTTAGATTGAAGAAAAAAGAGCGCTATAGAGCAAAACTTAGCTGCAGTAGTGCTGGTTTTAAGAAAAAAAGTGAAGCCAATAACCCGAGACCAGAAACAAGAACTGGTTGTCCTGCAATGATAGTGATTAGAATGGTTGAGTCCAACAGATGGAGAATAGTGGAGGTTGAGCTTCAACACAACCATCAAGTGAGTCCACAGAGCAAACGGTTTTACAAGTCACACAAGAAAATGATCGTTGAAGCCAGCAAATCACAACCACCGTCAGAGCCTGTAACGGAAGTACACACCATTAAGTTGTATCGAACCACTGTCATGGATGTTGATTACAATGTTCTTCACAGGAAGCACTTGAAAGAAGCCATGGCGGATTTGGAGACTAGAAACGTAAGCTTTGAATTGAAAACGAGATGCAATTTTGAGGTCCAGCTTGCAAAGGTGTATACAAAAGAAATCTTTCAAAAGTTTCAATCTGAGGTTGAGGGCATGTACTCTTGCTTCAACACAAGACAGGTAAGTGTCAATGGATCTATAATCACATACGTTGTGAAAGAAAGAGTTGAAGTTGAGGGGAATGAGAAGGGAGTTAAAAGTTTTGAAGTCTTATACGAGACTACAGAATTGGATATTCGTTGCATTTGCAGTTTGTTCAACTACAAAGGATATTTGTGCAGGCATGCATTGAATGTTCTCAATTACAACGGCATTGAGGAAATCCCATCTCGGTACATCCTGCACCGCTGGAGGAGGGATTTCAAGCAAATGTTTAATCAATTCCATGTCTATGATAATGTTGATTCCCACAACCCTGTGCCCTTGTATACTCGTCTGTTTAACAGTGCTCTTCCAGTGTTAGAAGTAGGGGCACAGTCACTGGAGCATTATATGGTTGCTTTAAAAGAACTGGAGGAGTTGTTAGGCAAGTTTGATATAGAGGACAATAACATAATGTAA 1335 0.3873 MMLNSADREEASRPRSAVGLASCFTRDVIGLEPRGQAVVLVLIEFSDGCTMEEVCLNSEPLFDESDEVDVEGNSSVAEHDLESLNSQPNNSPLPTVGLEFDSFDEVYNFYNIYAKEQGFGIRVSNSWFRLKKKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIVIRMVESNRWRIVEVELQHNHQVSPQSKRFYKSHKKMIVEASKSQPPSEPVTEVHTIKLYRTTVMDVDYNVLHRKHLKEAMADLETRNVSFELKTRCNFEVQLAKVYTKEIFQKFQSEVEGMYSCFNTRQVSVNGSIITYVVKERVEVEGNEKGVKSFEVLYETTELDIRCICSLFNYKGYLCRHALNVLNYNGIEEIPSRYILHRWRRDFKQMFNQFHVYDNVDSHNPVPLYTRLFNSALPVLEVGAQSLEHYMVALKELEELLGKFDIEDNNIM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00228 444 Coils Coil 242 262 - -
Gma20g00228 444 Pfam FAR1 DNA-binding domain 108 192 IPR004330 -
Gma20g00228 444 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 238 441 IPR031052 GO:0006355
Gma20g00228 444 ProSiteProfiles Zinc finger SWIM-type profile. 326 362 IPR007527 GO:0008270
Gma20g00228 444 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 72 225 - -
Gma20g00228 444 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 238 441 - -
Gma20g00228 444 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 72 225 IPR031052 GO:0006355
Gma20g00228 444 SMART 26again6 337 364 IPR006564 GO:0008270
Gma20g00228 444 Pfam SWIM zinc finger 334 359 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00228 Gma-Chr20 2760750 2766515 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gma20g00228 FAR1 5.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00228 K17604 - gmx:100811666 418.313