Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00223 ATGTTGGGTGGTCTATACGGAGACCTTCCTCCACCTTCCTCCGCCGAGGAAGACAACAAGCCCACCCCCAACGTCTGGTCCTCCAGCACCAAGATGGCTCCCGCCACGCTCCGCAAGCCCGCCTCCCTCTTCGCTCCCCCCCAAACCCTCCTCCGGGCCCAGCCCAAGCCCAGGCCCACCACCACAACCATCCCCAAGCCCATCCTCTCCTCCTCGCCCGCCCCTCCCCCTGATGACGCCCTCCTCCAGCCCGCCCTCGTTGGCGTCCAGTCCACCGTCCTCGAAGAATACGACCCGACCCGGCCCAACGACTACGAGGACTACCGCCGCGACCGCAAGCGCAAAGCCCGTGAGGCCGAGATGCTGCGCGAGCTCGAGCGCCGCCGCCACGAGGAGGAAGAGGAGGAGAAGGAAAGGGAAAAGGAAAGAGAAAGAGAGAGAGAAAGAGATCACAGCAATAACAACGATTCGTCGTCGTCGAGGCTTAATGTTTCCGGCGAAGAGGCGTGGAGGAGGCGCGCTGCGATGAGCGGGGCGGGGTCTGGGTCGGGGGCGGTGTTGGTGCCGAGGTCGCCGTCGCCACCCCCGGGGAATGTGGACGGGTTTACAATCGGGAAGTCGGAGACGGGGGGATTGGGGGtTGGGGCTGGCGGGCAGATGACGGCGGCGCAGCGGATGATGGCGAAGATGGGGTGGAAGGAAGGGCAGGGGCTGGGGAAACAGGAGCAGGGGATCACCACGCCTTTGATGGCGAAGAAGACCGATAGACGAGCCGGGGTTATTGTGAATGCCAGTGACAACAACAATAGCAGCAGCAGCAAGAAAGTTAAGAGTGTTAACTTCAATGGTGTGCCTACCAGGGTGCTGCTGCTCAGGAACATGGTGGGTCCTGGTGAGGTAGACGACGAGCTAGAAGATGAGGTAGGATCTGAATGTGCCAAATATGGAACTGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTCCCCGTTCATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCTGAAGAAACAACTAAAGCGCTTGTCGACCTTGATGGTCGGTACTTTGGGGGTAGAGTGGTGCGTGCCTCATTTTATGACGAGGAAAAGTTTAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCCGGCTTTACTTGA 1179 0.5844 MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRAQPKPRPTTTTIPKPILSSSPAPPPDDALLQPALVGVQSTVLEEYDPTRPNDYEDYRRDRKRKAREAEMLRELERRRHEEEEEEKEREKERERERERDHSNNNDSSSSRLNVSGEEAWRRRAAMSGAGSGSGAVLVPRSPSPPPGNVDGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNNNSSSSKKVKSVNFNGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVHEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRASFYDEEKFSKNELAPMPGEIPGFT 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00223 392 Coils Coil 105 154 - -
Gma20g00223 392 ProSiteProfiles G-patch domain profile. 219 265 IPR000467 GO:0003676
Gma20g00223 392 MobiDBLite consensus disorder prediction 18 35 - -
Gma20g00223 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 373 IPR000504 GO:0003723
Gma20g00223 392 PIRSF SPF45 3 388 IPR040052 GO:0045292
Gma20g00223 392 PANTHER SPLICING FACTOR 45 SPF45 1 383 IPR040052 GO:0045292
Gma20g00223 392 Gene3D - 283 381 IPR012677 -
Gma20g00223 392 SUPERFAMILY RNA-binding domain, RBD 289 376 IPR035979 GO:0003676
Gma20g00223 392 SMART rrm2_1 288 369 IPR003954 GO:0003676
Gma20g00223 392 CDD RRM_UHM_SPF45 285 381 IPR034653 -
Gma20g00223 392 Pfam G-patch domain 222 261 IPR000467 GO:0003676
Gma20g00223 392 MobiDBLite consensus disorder prediction 1 213 - -
Gma20g00223 392 MobiDBLite consensus disorder prediction 99 155 - -
Gma20g00223 392 SMART G-patch_5 217 263 IPR000467 GO:0003676
Gma20g00223 392 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00223 Gma-Chr20 2694889 2699482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00223 225 260 C2H2 Transcription Factor Family AT5G26610 61.111 6.57e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00223 K12840 - gmx:100800998 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g02171 07 43999956 44005078 Gma20g00223 20 2694889 2699482 GST