Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00219 ATGAAAGATGGTGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTTCTTAGGAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAGCCTCAGAAGTTTGCAAATGTGCACAAAGTCTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAGCGAGGAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGAGTGAGAGACCCTGTCTATGGCTGTGTAGGGGCCATCTCATCTCTTCAGCAACAAATTGATGTGTTGCAGACCCAATTGGCAGTGGCACAGGCTGAGGCTGTGCACCTCAGAGTGCGCCAAGCTGCATCACTCTACAGCCCCACTAGCCCAACCAACAGTGGCTCTCCATCACAAGCCAAGCCTATTTTTGACATGGACATGGTGGTGGACCAGACCCCCTATGGTGATTCAATCTGGTGA 480 0.5042 MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQAASLYSPTSPTNSGSPSQAKPIFDMDMVVDQTPYGDSIW 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00219 159 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Gma20g00219 159 Coils Coil 92 112 - -
Gma20g00219 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 137 - -
Gma20g00219 159 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Gma20g00219 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00219 Gma-Chr20 2579066 2584054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00219 1 159 AS2 family AT1G31320 70.000 5.70e-75 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma20g00219 LOB 5.3e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00219 - - gmx:100306560 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g02168 07 43934335 43939176 Gma20g00219 20 2579066 2584054 GST