Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00214 ATGGAAAGAGGTGCTTACAGAGGCCGTGGCCGTAACGGTAAtggtggccgtaacagttacggtggtggtcgcggtagttacggtggtggccgtgacggtaacggtgaccataacagttacggtggtggccgCGGTGGTCGTAGCAGTTACGGTGATAGAAGTTCTCCTTCTCAATCACAGTGGCAACCAAGGTCAAACCCTTCTTTTTCTTCTCCAAAACCTAACAATTCTCATTCTCAAGTTCAAACACAAACTCAAGCTCATCCAGACATTGGATCTTCGAAGATACCAGAGAAGAAAATGGACACCATCACACCTGTGCGTAGGCCTGACAATGGGGGAACAGTTGCAGTGCGAAAGTGCTATCTCCGTGTGAACCATTTCCCTGTTTCCTTCAATCCACAGAGTATAATTATGCATTATAATGTGGAAGTGAAGGCCAAGGCTCCTCCACTGAAGAACAATCGTCCTCCCAAGAAGATTTCGAAGTACGACTTGTCATTGATTCGGGATAAGCTGTTTTCCGACAATTCACTGCCAGCTTCAGCGTATGATGGTGAAAAGAACATCTTCAGCGCGGTGCCTTTGCCGGAGGAAACATTTACCGTGGACGTGTCCAAAGGAGAGGACGAAAGGCCTGTTTCTTATTTGGTCTCTCTGACATTGGTGAGTAGGCTCGAGCTTCGGAAGTTGAGGGATTACCTCAGTGGAAGCGTGCTTTCGATCCCTAGGGATGTTTTGCACGGCTTGGATTTGGTGGTGAAGGAAAATCCTTCGAAGCAGTGTGTTTCCTTGGGGCGGTGCTTCTTCCCCATGAACCCTCCTTTGAGGAAGAAAGATCTTAACCATGGCATAATTGCGATTGGAGGGTTTCAGCAGAGTCTTAAGTCTACTTCTCAGGGATTGTCCTTGTGCCTGGACTATTCGGTTTTGTCCTTTCGGAAGAAGCTGTTGGTGTTGGATTTTCTGCACGAGCATATTAGGGACTTCAATTTAAGGGAGTTTGGGCGGTTCAGGAGACAAGTTGAGCATGTACTTATTGGGTTGAAGGTTAATGTTAAACACCGGAAGACAAAGCAGAAGTACACTATTACTAGGTTGACACCCAAGGTTACGAGACATATCACATTCCCTATTTTGGATCCCGAGGGCCGGAATCCCCCAAAGGAAGCTACTCTGGTTGGTTACTTTCTAGAGAAGTATGGTGTGAACATTGAATACAAGGACATTCCTGCCTTGGATTTTGGAGGCAACAAGACGAATTTTGTGCCTATGGAGTTGTGTGAGTTGGTTGAGGGGCAGAGATATCCCAAAGAGAATTTGGACAAATATGCTGCCAAGGACTTAAAAGACATGTCAGTGGCTCCTCCAAGGGTGAGGCAAAGTACAATACAAGCAATGGTAAACTCAGAGGACGGACCGTGCGGAGGTGGTGTTATTAAAAATTTTGGAATGAGTGTCAACACTTCCATGACAAATGTGACAGGACGTGTAATTCAGCCTCCACAATTGAAGCTAGGTAATCCAAATGGCCAGACTGTTAGTATGACACTTGAAGTAGAGAAATGTCAGTGGAATCTAGTGGGACGATCAATGGTGGAAGGCAAGCCAGTTGAGTGTTGGGGCATTCTTGATTTTACCAGCCAGGAGTCTGGTTGGCGCAAATTAAACAGCAAACAATTCATTGAGAACCTTATGGGTAAGTATAGAAAATTGGGTATTGGCATGAAGGAGCCAGTTTGGCGTGAACAATCTAGTATGTGGAGTCTTGGGGATTACAATTCGCTGTGTAAATTACTTGAAAATATTGAGGATAAGGTTCAAAAAAGATATCGACGAAAACTACAATTTCTTCTGTGTGTGATGTCCGACAAGCATCAAGGTTACAAGTGCCTCAAATGGATTGCTGAGACCAAGGTTGGCATAGTGACACAATGCTGCTTGTCTGGTATTGCTAATGAAGGGAAGGACCAATATCTTACAAATCTTGCCCTCAAGATCAATGCCAAAATTGGAGGAAGTAATGTGGAGCTCATCAATAGGCTACCACACTTTGAGGGTGAAGGTCATGTTATGTTCATAGGGGCTGATGTCAATCATCCAGCTTCCCGGGACATCAACAGTCCATCAATTGCTGCTGTAGTTGCCACTGTTAATTGGCCTGCTGCAAATCGCTATGCAGCACGTGTTTGTGCTCAAGGTCATCGGGTTGAGAAAATTTTGAATTTTGGGAGAATTTGCTATGAACTTGTTTCGTATTACGATAGGCTGAACAAAGTCAGGCCTGAAAAAATTGTTGTCTTTCGTGATGGCGTGAGCGAAAGTCAATTCCATATGGTTCTCACAGAGGAGTTACAAGATTTGAAATCGGTGTTTAGTGATGCAAATTACTTCCCAACCATCACTATTATTGTCGCACAAAAGCGACATCAAACTCGATTTTTTCCTGTGGGTCCAAAGGATGGGATTCAAAATGGCAATGTGTTTCCAGGTACAGTTGTGGACACAAAAGTAGTACATCCTTTTGAATTTGACTTTTACCTTTGTAGTCACTATGGAAGCTTGGGTACTAGTAAGCCCACTCACTATCATGTCTTATGGGATGAGCATAAATTTAACTCTGATGATTTGCAGAAACTGATATATGACATGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGATCTCACTGCATATAGAGGACGGTTATACTATGAAGCAATGAATCAAATGCAATCTCCTGGTTCAGCTGTGTCGTCTTCATCATCACAGATTACTTCTTTGTCAATTTCTTCAACAGGCTCAAGTTTAAATGATCCGGGGTATTACAAGTTGCATGCTGATGTGGAAAATATAATGTTCTTCGTTTGA 2901 0.4209 MERGAYRGRGRNGNGGRNSYGGGRGSYGGGRDGNGDHNSYGGGRGGRSSYGDRSSPSQSQWQPRSNPSFSSPKPNNSHSQVQTQTQAHPDIGSSKIPEKKMDTITPVRRPDNGGTVAVRKCYLRVNHFPVSFNPQSIIMHYNVEVKAKAPPLKNNRPPKKISKYDLSLIRDKLFSDNSLPASAYDGEKNIFSAVPLPEETFTVDVSKGEDERPVSYLVSLTLVSRLELRKLRDYLSGSVLSIPRDVLHGLDLVVKENPSKQCVSLGRCFFPMNPPLRKKDLNHGIIAIGGFQQSLKSTSQGLSLCLDYSVLSFRKKLLVLDFLHEHIRDFNLREFGRFRRQVEHVLIGLKVNVKHRKTKQKYTITRLTPKVTRHITFPILDPEGRNPPKEATLVGYFLEKYGVNIEYKDIPALDFGGNKTNFVPMELCELVEGQRYPKENLDKYAAKDLKDMSVAPPRVRQSTIQAMVNSEDGPCGGGVIKNFGMSVNTSMTNVTGRVIQPPQLKLGNPNGQTVSMTLEVEKCQWNLVGRSMVEGKPVECWGILDFTSQESGWRKLNSKQFIENLMGKYRKLGIGMKEPVWREQSSMWSLGDYNSLCKLLENIEDKVQKRYRRKLQFLLCVMSDKHQGYKCLKWIAETKVGIVTQCCLSGIANEGKDQYLTNLALKINAKIGGSNVELINRLPHFEGEGHVMFIGADVNHPASRDINSPSIAAVVATVNWPAANRYAARVCAQGHRVEKILNFGRICYELVSYYDRLNKVRPEKIVVFRDGVSESQFHMVLTEELQDLKSVFSDANYFPTITIIVAQKRHQTRFFPVGPKDGIQNGNVFPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHKFNSDDLQKLIYDMCFTFARCTKPVSLVPPVYYADLTAYRGRLYYEAMNQMQSPGSAVSSSSSQITSLSISSTGSSLNDPGYYKLHADVENIMFFV 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00214 966 Gene3D paz domain 312 436 - -
Gma20g00214 966 Gene3D - 498 679 - -
Gma20g00214 966 CDD Piwi_ago-like 479 915 IPR045246 -
Gma20g00214 966 SUPERFAMILY Ribonuclease H-like 601 917 IPR012337 -
Gma20g00214 966 SMART DUF1785_2 263 316 IPR014811 -
Gma20g00214 966 Pfam Piwi domain 618 915 IPR003165 GO:0003676
Gma20g00214 966 SUPERFAMILY PAZ domain 313 469 IPR036085 GO:0005515
Gma20g00214 966 SMART PAZ_2_a_3 321 464 IPR003100 GO:0005515
Gma20g00214 966 MobiDBLite consensus disorder prediction 1 111 - -
Gma20g00214 966 Gene3D - 688 966 IPR036397 GO:0003676
Gma20g00214 966 ProSiteProfiles Piwi domain profile. 617 916 IPR003165 GO:0003676
Gma20g00214 966 Pfam Argonaute linker 1 domain 265 315 IPR014811 -
Gma20g00214 966 ProSiteProfiles PAZ domain profile. 346 432 IPR003100 GO:0005515
Gma20g00214 966 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 40 965 - -
Gma20g00214 966 SMART Piwi_a_2 617 916 IPR003165 GO:0003676
Gma20g00214 966 CDD PAZ_argonaute_like 319 431 - -
Gma20g00214 966 Pfam N-terminal domain of argonaute 119 253 IPR032474 -
Gma20g00214 966 MobiDBLite consensus disorder prediction 50 91 - -
Gma20g00214 966 Pfam PAZ domain 325 442 IPR003100 GO:0005515
Gma20g00214 966 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 40 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00214 Gma-Chr20 2502174 2506560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00214 86 965 Eukaryotic Initiation Factors Gene Family AT1G48410 33.871 1.91e-145 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00214 K11593 - gmx:100805250 1820.82