Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00192 ATGCTTGGTGGTGGTAGCAGAAGCAGCACAAGACTAATTGGACAATCATCATATTCATGTCCACCAAGAATGGTTACAATTTCATCAGAGGCTGCTTCTTCTTTCTCTTTTGCATCGCCTCTTAAAAGAtacgatgtttttatcagttttagaggcgaggacacgcgcaataacttcacaagccatctttatgctgcctttcagttgaacaaaatccaagccttcatagacaacaggcttcacaagggggatgagatctctccctcgattttcaaagccatcaaacactgcaacctttctgtggttgttctctccaaacactatgcttcctccacgtggtgcttgcgtgaactcgcggaaatacttgatcacaagaaacgtggtggacacattgttatacctgtgttctataagatcgacccttctcatgtaaggaagcagaccggcacttatgggaaagcattcgaaaaatatgaaagagatgttaaacacaacatggccatgctgcagaaatggaaagctgctctcactgaagttgccaatttagttgggtgggaattcaagaatcatagGACGGAAAATGAACTCAttgagggaattgtcaaagatgttatggaaaagctgaatcgtatatatcccactgaagtaaaagaaacacttgttggaattgatcaaaatattgctcctatagaatcactattgagaatcgggtcaaaagaagttcgcataattggaatttggggcatgggtggagtaggaaagacaaccattgccaatgctttatttaccaaattatcatctcaatatgaaggtagttgcttcttggcaaatgtaagggaagaatatgaaaatcaaggacttggttatttacgaaataaacttttttctgaggtactggaggatgatgtgaatctccatattagcacccccaaagtaagatccacttttgttatgaggaggcttagacaaaaaaaggttttgatagttcttgacgatgtcgatgattcaaagaaactagaatatcttgctgcacaacatgattgtttgggatctggtagtatagtcattgtcaccaccagagacaagcatgtcattagcaaaggggtggatgaaacatatgaggtcaagggattgtcccttcaccatgctgttaggctttttagtttaaatgccttcgggaaaacctatcctgaaaagggctttgaaatgctatcaaaacaggtggttgatcatgcaaatggcaatccattggctttaaaagttttaggttcacttctccattccagaaatgagcagcaatgggccaatgctttgagaaaactcacgaaggttcctaatgcagagattcagaatgtcttaagatggagttatgatggactggattatgaacaaaaaaatatgttcctggacattgcgtgctttttccgaggagagaatatagaaaatgttataaggctactagaaatttgtggtttctatccatatattggtataaaaatccttcaagaaaaaagtcttgtaactttttctgatgacggtaaagtgtgtatgcatgacttgatacaagaaatgggctgggaaattgttcaccgggaatctatcaaagatcctggaaggcgtagccgattgtgggatccaaaagaagtctatgatgtattgaaaaataacaggggaactgatgcagttgaaggcataatcttagatgtgtctcaaataagtgacttgcccttgagctatgagaccttctcaaggatgatcaatataagatttctcaaattctatatggggaggggtaggacatgcaatttgctccttccttcaggtctcaaatcattgcctaataaattaatgtacctacaatgggatggatacccttccaagtctttgccatctactttttgtactgacaaccttgttgtgctttccatgatggaaagccatgttgaaaaactttgggatggaatcaagAGTTTTGCAAGTTTGAAAGAGATCAACCTCCGTGCCAGCAAAAAGTTAACTAATCTCCCAGATTTATCTCTGGCACCAAATCTTGAAACTATAGATGTTTCTCATTGCACAAGTCTGCTTCATGTTCCCTTATCCATTCAATATGTCAAGAAGCTTCTTCTGTTTAACTTGGAATCCtgcaagaatcttaagagtcttccaataaacattcacttgtcttctcttgaaatgttcattctcagacgctgttcaagtcttgacgagttttcagTGACTTCACAGAACATGACAAACCTAGACTTGAGAGAAACAGCAATAAAAGATTTCCCAGAATATCTTTGGGAGCATCTGAACAAGCTTGTTTACTTGAATCTGGAATCCTGCAGCATGCTCAAGAGTCTTACAAGCAAAATTCACTTAAAATCTCTTCAAAAACTCAGTCTGAGAGATTGTTCAAGTCTTGAGGAGTTTTCTGTGACTTCGGAGAACATGGGATGCTTGAATTTGAGAGGGACATCAATAAAAGAATTGCCAACATCACTTTGGCGCAATAACAAGCTTTTTACTTTGGTTCTTCATTCCTGTAAAAAACTTGTGAATTTTCCTGACAGACCAAAACTTGAGGATCTGCCTCTCATTTTCAATGGGGTATCCTCCTCTGAAAGTCCAAATACGGATGAACCATGGACTTTGTCATCCTTAGCAGATTTATCTCTAAAAGGAAGCAGTATTGAGAATTTACCTGTAAGCATCAAAGATCTTCCTAGTCTTAAAAAGCTTACCTTGACTGAGTGCAAGAAACTTCGGTCTTTACCAAGCCTTCCTCCATCCTTGGAAGACTTGTCCTTAGATGAAAGTGATATTGAGTGTTTATCTTTAAGTATCAAGGATCTTTCTCACTTGAAAATACTTACCCTAACCAACTACAAGAAGCTTATGTCTCCACAAGACCTTCCATCATCTTCAAAAGCTTCATTACTAAATGAAAGTAAAGTTGATTCCCATCTTGTGAGCATGAAAGGTCTTTCTCATCTACAGAAGTTTCCTCTGGTTAAGTGGAAAAGGTTTCATTCTCTACCAGAGCTTCCACCATTCTTGGAAGAATTGTCACTAAGTGAAAGCAATATTGAGTGCATACCTAAAAGCATAAAAAATCTTTCTCATCTGAGAAAACTAGCCATAAAAAAGTGCACAGGGCTTCGATATTTACCAGAGCTTCCACCATATTTGAAAGATTTGTTTGTACGTGGATGCGATATTGAAAGCTTGCCAATAAGCATCAAAGATCTTGTTCATTTGCGAAAGATCACCTTAATTGAGTGCAAGAAGCTCCAGGTTCTACCAGAGCTCCCACCATGCCTGCAATCATTTTGTGCAGCTGACTGCAGATCACTTGAGATTGTTCGAAGTTCAAAGACTGTCTTAATAGAAGATAGATATGCATACTATTACAATTGCATAAGCTTGGATCAAAATTCACGCAACAATATCATTGCAGATGCACCCTTTGAGGCAGCTTATACTTCTTTGCAACAAGGAACACCTCTTGGTCCTCTCATTTCTATTTGTTTGCCGGGAACTGAAATCCCAGACTGGTTCAGCTACCAATCAACAAATTCTTCACTGGACATGGAAATTCCTCAACAGTGGTTCAAAGATTCAAAGTTCTTAGGTTTTGCCCTGTGCCTTGTAATTGGTGGCTTCCTGCAAAACAGTTATGAAGGGTATGATCCAGATGTCAAGTGTTATCACTTTGTGAAGTCTGCCTTTAACTCTGACCCCAGTGTTCCCTTTCTTGGCCATTGCACAACTGTAATGCAGGTGCCACAAGGTTTTAATTCAGACCATATGTTTATATGCTACTATCCCACTTTTAATGCCTCCATTCTACAAGATTTCAAGGATTTAGGCATGTACTATGATGCCAACAGCTTAAGGCTCCGAGTCATCTTTAAATTTAAGGGTCCATATCAACGGTTGGACATTGTAAAGAAGTGCGGGGTCAGACCTCTGTTGATTGCTAATACTGAAAGAGAGTACATCCTTGAAACCATAGGACAACTTTGA 4035 0.2059 MLGGGSRSSTRLIGQSSYSCPPRMVTISSEAASSFSFASPLKRYDVFISFRGEDTRNNFTSHLYAAFQLNKIQAFIDNRLHKGDEISPSIFKAIKHCNLSVVVLSKHYASSTWCLRELAEILDHKKRGGHIVIPVFYKIDPSHVRKQTGTYGKAFEKYERDVKHNMAMLQKWKAALTEVANLVGWEFKNHRTENELIEGIVKDVMEKLNRIYPTEVKETLVGIDQNIAPIESLLRIGSKEVRIIGIWGMGGVGKTTIANALFTKLSSQYEGSCFLANVREEYENQGLGYLRNKLFSEVLEDDVNLHISTPKVRSTFVMRRLRQKKVLIVLDDVDDSKKLEYLAAQHDCLGSGSIVIVTTRDKHVISKGVDETYEVKGLSLHHAVRLFSLNAFGKTYPEKGFEMLSKQVVDHANGNPLALKVLGSLLHSRNEQQWANALRKLTKVPNAEIQNVLRWSYDGLDYEQKNMFLDIACFFRGENIENVIRLLEICGFYPYIGIKILQEKSLVTFSDDGKVCMHDLIQEMGWEIVHRESIKDPGRRSRLWDPKEVYDVLKNNRGTDAVEGIILDVSQISDLPLSYETFSRMINIRFLKFYMGRGRTCNLLLPSGLKSLPNKLMYLQWDGYPSKSLPSTFCTDNLVVLSMMESHVEKLWDGIKSFASLKEINLRASKKLTNLPDLSLAPNLETIDVSHCTSLLHVPLSIQYVKKLLLFNLESCKNLKSLPINIHLSSLEMFILRRCSSLDEFSVTSQNMTNLDLRETAIKDFPEYLWEHLNKLVYLNLESCSMLKSLTSKIHLKSLQKLSLRDCSSLEEFSVTSENMGCLNLRGTSIKELPTSLWRNNKLFTLVLHSCKKLVNFPDRPKLEDLPLIFNGVSSSESPNTDEPWTLSSLADLSLKGSSIENLPVSIKDLPSLKKLTLTECKKLRSLPSLPPSLEDLSLDESDIECLSLSIKDLSHLKILTLTNYKKLMSPQDLPSSSKASLLNESKVDSHLVSMKGLSHLQKFPLVKWKRFHSLPELPPFLEELSLSESNIECIPKSIKNLSHLRKLAIKKCTGLRYLPELPPYLKDLFVRGCDIESLPISIKDLVHLRKITLIECKKLQVLPELPPCLQSFCAADCRSLEIVRSSKTVLIEDRYAYYYNCISLDQNSRNNIIADAPFEAAYTSLQQGTPLGPLISICLPGTEIPDWFSYQSTNSSLDMEIPQQWFKDSKFLGFALCLVIGGFLQNSYEGYDPDVKCYHFVKSAFNSDPSVPFLGHCTTVMQVPQGFNSDHMFICYYPTFNASILQDFKDLGMYYDANSLRLRVIFKFKGPYQRLDIVKKCGVRPLLIANTEREYILETIGQL 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00192 1344 Gene3D - 210 376 IPR027417 -
Gma20g00192 1344 Gene3D - 39 209 IPR035897 -
Gma20g00192 1344 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 772 935 IPR044974 GO:0006952
Gma20g00192 1344 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 37 771 IPR044974 GO:0006952
Gma20g00192 1344 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 888 1098 IPR044974 GO:0006952
Gma20g00192 1344 SUPERFAMILY L domain-like 517 855 - -
Gma20g00192 1344 SMART till_3 43 182 IPR000157 GO:0007165
Gma20g00192 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 471 IPR027417 -
Gma20g00192 1344 Pfam C-JID domain 1180 1325 IPR045344 -
Gma20g00192 1344 ProSiteProfiles TIR domain profile. 42 208 IPR000157 GO:0007165
Gma20g00192 1344 Gene3D Ribonuclease Inhibitor 986 1167 IPR032675 -
Gma20g00192 1344 PRINTS Disease resistance protein signature 243 258 - -
Gma20g00192 1344 PRINTS Disease resistance protein signature 412 426 - -
Gma20g00192 1344 PRINTS Disease resistance protein signature 320 334 - -
Gma20g00192 1344 PRINTS Disease resistance protein signature 908 924 - -
Gma20g00192 1344 Pfam TIR domain 44 223 IPR000157 GO:0007165
Gma20g00192 1344 Gene3D - 378 461 IPR042197 -
Gma20g00192 1344 SUPERFAMILY Toll/Interleukin receptor TIR domain 38 185 IPR035897 -
Gma20g00192 1344 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 772 935 - -
Gma20g00192 1344 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 37 771 - -
Gma20g00192 1344 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 888 1098 - -
Gma20g00192 1344 Gene3D Ribonuclease Inhibitor 751 820 IPR032675 -
Gma20g00192 1344 Gene3D Ribonuclease Inhibitor 560 750 IPR032675 -
Gma20g00192 1344 Gene3D Ribonuclease Inhibitor 821 985 IPR032675 -
Gma20g00192 1344 Pfam Leucine Rich Repeat 637 656 IPR011713 -
Gma20g00192 1344 Pfam NB-ARC domain 231 447 IPR002182 GO:0043531
Gma20g00192 1344 SUPERFAMILY L domain-like 822 1123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00192 Gma-Chr20 2135605 2141119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00192 729 923 WRKY Transcription Factor Family AT4G12020 31.683 4.03e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00192 - - gmx:100797269 2602.78