LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma20g00167	ATGGTCGTGTCACCCAATTGCCACTATTTCTCTTCTTTGGAAACCCTTCCCCTCCATGTCTCCTTTTTCCTTAACCCCTTCCATTGTGTCCTTTGCCATTCCTCCACTACCACCACCACCCTTCTCCTGAAATCCTCATTCTTGAAGCTGATTTTGCAACAACCTCAACCATTTTGGCGCAATTACCATCACTGGCAAGGCATAGTTGGATTTGTGGGTGTTGAAGACAAAGTTTTAGATCTCTCAGGTAGAGGAAGAGAGAAAGAACTGACCTCAGCGGCGGCGGCGGCGGCAACAGAAGAACAACCACCACCACACACAATGGGTCGCGTGAGAACAAAAACGGTGAAGAAATCCTCCCGCCAGGTGATTGAGCGTTACTACTCGCGCATGACCCTCGACTTCCACACAAACAAAAAGCTTCTCGAAGAAGTGGCCATCATCCCTTCCAAGAGGCTGCGGAACAAGATCGCGGGTTTCTCCACGCATCTCATGAAGCGCATCCAGAAGGGTCCCGTTCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGACGTCTCCGCCATCAACACCGACCACATCGAAGTCGACAAAGAAACCCTTGACATGCTTCATTCCCTCGGAATCAACGACATCCCCGGCATCACACAGGTTGACCCTGTTCCTGTTCAACAGGCCTTCCCCTTCACCAGGAGGTACTGA	729	0.5254	MVVSPNCHYFSSLETLPLHVSFFLNPFHCVLCHSSTTTTTLLLKSSFLKLILQQPQPFWRNYHHWQGIVGFVGVEDKVLDLSGRGREKELTSAAAAAATEEQPPPHTMGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKLLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAINTDHIEVDKETLDMLHSLGINDIPGITQVDPVPVQQAFPFTRRY	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma20g00167	242	ProSitePatterns	Ribosomal protein S17e signature.	148	163	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Gma20g00167	242	Hamap	30S ribosomal protein S17e [rps17e].	108	170	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Gma20g00167	242	Pfam	Ribosomal S17	108	227	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Gma20g00167	242	Gene3D	-	108	169	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Gma20g00167	242	PANTHER	40S RIBOSOMAL PROTEIN S17	108	240	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Gma20g00167	242	SUPERFAMILY	Rps17e-like	108	169	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Gma20g00167	242	PANTHER	40S RIBOSOMAL PROTEIN S17	108	240	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma20g00167	Gma-Chr20	1802466	1803848	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma20g00167	108	236	Cytoplasmic Ribosomal Protein Gene Family	AT5G04800	86.047	3.43e-76	225

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma20g00167	K02962		-	gmx:100527036	268.855