Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00162 ATGGCGAAGCGCTTGATTCCCTGCTTCAATCGCATTCTCATCGAGAAAATCGTCCCTCCCTCCAAAACCAGCGCCGGCATTCTACTCCCGGAGAAGACCTCCCAGCTTAATTCCGGTAAGGTGATAGCGGTTGGACCTGGATCACGTGACAAGGCGGGGAACTTGATTCCGGTGTCTGTGAAGGAAGGTGATCACGTGCTCTTGCCGGAGTACGGTGGCACGCAGATCAAGCTCGATGACAAAGAGTTCCATTTGTTTAGGGATGAGGACATTTTGGGTATTCTGCATGATTGA 294 0.517 MAKRLIPCFNRILIEKIVPPSKTSAGILLPEKTSQLNSGKVIAVGPGSRDKAGNLIPVSVKEGDHVLLPEYGGTQIKLDDKEFHLFRDEDILGILHD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00162 97 CDD cpn10 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma20g00162 97 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma20g00162 97 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma20g00162 97 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma20g00162 97 PRINTS 10kDa chaperonin signature 82 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma20g00162 97 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 97 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma20g00162 97 SUPERFAMILY GroES-like 3 96 IPR011032 -
Gma20g00162 97 SMART Cpn10_2 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma20g00162 97 PANTHER GROES-LIKE FAMILY PROTEIN 1 97 - -
Gma20g00162 97 Pfam Chaperonin 10 Kd subunit 6 94 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gma20g00162 97 Gene3D GroES chaperonin 1 97 IPR037124 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00162 Gma-Chr20 1748128 1749024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00162 3 96 Calmodulin-binding Proteins AT5G20720 38.542 1.12e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00162 K04078 - gmx:100499767 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g02121 07 43101163 43101654 Gma20g00162 20 1748128 1749024 GST