Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00160 ATGGAGAAGTACAACCAGTCCAATGAAGGGGTTTTGGGGGAATGTGAAGTGGGTTCGATCTTGATTGTGGAAAATGCAAAGCCTATGTGGCAATTGGGAATGTGTGGTGTTGGGGAGGAATCATATCCACAACGCCTTAATGAGGTTGATTGCACTTATTATTTGAGGATTGGCTTATGTGGCTTTGGTTCCCACTACCAATTCAACCATCCTCGTGATCATGCCGCGGTAACTATTCTTCTTCTTGCTTTAAAGGGTTTTCATTATGTCATTATGTGCTTTTATGTTCGCAATTTCGTCTAA 303 0.4191 MEKYNQSNEGVLGECEVGSILIVENAKPMWQLGMCGVGEESYPQRLNEVDCTYYLRIGLCGFGSHYQFNHPRDHAAVTILLLALKGFHYVIMCFYVRNFV 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00160 100 ProSiteProfiles Zinc finger C3H1-type profile. 45 73 IPR000571 GO:0046872
Gma20g00160 100 PANTHER PROTEIN PHOSPHATASE RELATED 26 76 - -
Gma20g00160 100 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 26 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00160 Gma-Chr20 1692665 1693069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00160 29 77 C2H2 Transcription Factor Family AT3G02830 50.000 2.47e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma20g00160 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00160 - - gmx:100812433 94.7449