Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00159 ATGATGGCGTCGACCATGACGTTGAAGAGATTTCGGTACCGAACCCCGGTGGTGAAGCGCGATTTTGAGAGGAATCTCAAGGTTGAGGCGATAAAGATTGTAAGGGTAGAGGTTGATGAAGAGGGAAGAGTGGGTGTCATGAAGGAATTGGAGAACGGTTTTGCGGACGTGTTAATTACAAGGGTAGGTCAGGGAGAGAGAGCCTCACACAAAAGGCATCACTGCTCAAACCACAATAAGAAGCTAAGAAGCCTAATAATAAAGATGTCCATGGAAGTGCACCAAGTTGTGCCACCACCTCACAAGAGCACCCTTCAGAAACTCAAGGGTAGGCTCAAGGAAACTTTCTTCCCTGATGATCCTCTGCGCCAATTCAAGGGACAACCTCTTAAGAGAAAACTGATCCTTGGAGCTCAATATGTGTTCCCTATTCTCCAATGGGGTCCTAAGTATAATCTCAAACTCTTCAAATCTGACCTTGTTTCTGGCCTCACTATTGCTAGCTTGGCCATCCCGCAGGGAATTAGTTATGCTAAGCTTGCAAGTCTTCCTCCAATTGTTGGACTTTATTCTAGTTTTGTTCCACCACTTGTCTATGCTGTTCTTGGAAGCTCAAAGGACCTTGCAGTTGGACCTGTTTCTATTGCTTCTCTTGTGATGGGATCCATGTTGCATCAGGAAGTGTCTCCCACAACAGATCCAATTCTGTTTCTTCAGCTAGCTTTCACTTCAACATTATTTGCCGGTCTCTTTCAAGCTTTGCTTGGAATCCTAAGGCTAGGCTTCATAATTGATTTTCTATCTAAGGCCATTCTTATTGGGTTCATGGCTGGAGCTGCTATTATTGTCTCACTGCAACAGCTCAAGAGCCTGCTTGGAATCACACATTTCACTAATCAGATGGGTCTGATTCCTGTTATGACTTCTGTTTTTCACAATATACATGAGTGGTCATGGCAAACAATATTGATGGGGATTTGCTTCTTGGTACTACTACTATTAGCAAGACACGTTAGCATAAGGAAACCAAAACTATTCTGGGTCTCAGCTGGAGCTCCTCTTATGTGTGTCATCATCTCTACCCTCTTGGTTTTTGCAATTAAGGCTCAAAATCATGGCATCAGTGTGATTGGGAAATTGCAAGAAGGAATAAATCCTCCATCATGGAATATGTTGCTCTTTCATGGAAGTCACCTGGACCTAGTCATGAAAACAGGGCTTATCACTGGGATTTTGTCCCTCACTGAAGGTATTGCAGTAGGAAGGACATTTGCAGCTCTCAAAAACTACAAAGTGGATGGAAATAAGGAAATGATGGCAATTGGGTTTATGAATGTTGTTGGCTCCTTCACTTCCTGCTATGTTACAACAGGTGCTTTCTCTCGGTCAGCAGTTAACAACAATGCAGGCGCAAAAACAGCTGTGTCAAATGTAGTGATGTCTGTGACAGTCATGGTGACACTCCTTTTTCTCATGCCATTGTTTCAATACACGCCTAATGTCGTGCTGGGCGCAATCATAGTCACAGCAGTAATTGGCCTCATCGATCTCCCCGCTGCTTGTAACATTTGGAAGATCGACAAATTCGATTTTGTTGTGATGATGACTGCTTTCTTAGGTGTTCTTTTCATCTCTGTCCAAGGAGGCCTTGCTCTTGCTGTTGGATTATCAACTTTGAAGATACTCTTGCAAATTACGAGACCGAAAACAGTGATGTTGGGGAAGATACCAGGAACAGACATATATAGAAATCTTGATCAATACAAGGAAGCTGTGAGAATACCTGGATTTCTTATTTTAAGCATTGAGGCTCCCATCAATTTTGCCAACATCACATATCTCAACGAGAGAACGTTAAGATGGATTGAAGAAGAAGAAGACAACATAAAGGAACAATTAAGCCTTCGATTCTTAGTATTGGAAATGTCAGCTGTGAGTGCTGTTGACACAAGTGGAATCTCACTTTTCAAGGAGTTGAAAGCAACACTGGAAAAGAAAGGTCTTGTGTTGGTCAATCCTCTTGCTGAGGTCATAGAAAAGCTTAAAAAAGCAGATGAAGCTAATGATTTCATAAGAGCAGATAACCTTTTCTTGACAGTTGGAGAGGCTGTAGCTTCACTTTCTTCAGCAATGAAAGGCCAATCATCAACCATTACAGAAGGGGCACACACAATTGTGTCACATAATTGA 2190 0.4242 MMASTMTLKRFRYRTPVVKRDFERNLKVEAIKIVRVEVDEEGRVGVMKELENGFADVLITRVGQGERASHKRHHCSNHNKKLRSLIIKMSMEVHQVVPPPHKSTLQKLKGRLKETFFPDDPLRQFKGQPLKRKLILGAQYVFPILQWGPKYNLKLFKSDLVSGLTIASLAIPQGISYAKLASLPPIVGLYSSFVPPLVYAVLGSSKDLAVGPVSIASLVMGSMLHQEVSPTTDPILFLQLAFTSTLFAGLFQALLGILRLGFIIDFLSKAILIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMTSVFHNIHEWSWQTILMGICFLVLLLLARHVSIRKPKLFWVSAGAPLMCVIISTLLVFAIKAQNHGISVIGKLQEGINPPSWNMLLFHGSHLDLVMKTGLITGILSLTEGIAVGRTFAALKNYKVDGNKEMMAIGFMNVVGSFTSCYVTTGAFSRSAVNNNAGAKTAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDLPAACNIWKIDKFDFVVMMTAFLGVLFISVQGGLALAVGLSTLKILLQITRPKTVMLGKIPGTDIYRNLDQYKEAVRIPGFLILSIEAPINFANITYLNERTLRWIEEEEDNIKEQLSLRFLVLEMSAVSAVDTSGISLFKELKATLEKKGLVLVNPLAEVIEKLKKADEANDFIRADNLFLTVGEAVASLSSAMKGQSSTITEGAHTIVSHN 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00159 729 Gene3D STAS domain 567 709 IPR036513 -
Gma20g00159 729 PANTHER BNAA09G30120D PROTEIN 92 714 IPR030313 -
Gma20g00159 729 PANTHER SULFATE TRANSPORTER 92 714 IPR001902 GO:0015301|GO:0016020|GO:0055085
Gma20g00159 729 Pfam Sulfate permease family 156 536 IPR011547 GO:0016021
Gma20g00159 729 TIGRFAM sulP: sulfate permease 143 703 IPR001902 GO:0015301|GO:0016020|GO:0055085
Gma20g00159 729 Pfam STAS domain 588 703 IPR002645 -
Gma20g00159 729 ProSitePatterns SLC26A transporters signature. 185 206 IPR018045 GO:0008271|GO:0008272
Gma20g00159 729 CDD STAS_SulP_like_sulfate_transporter 588 700 - -
Gma20g00159 729 ProSiteProfiles STAS domain profile. 587 707 IPR002645 -
Gma20g00159 729 SUPERFAMILY SpoIIaa-like 593 707 IPR036513 -
Gma20g00159 729 Coils Coil 674 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00159 Gma-Chr20 1678356 1692570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00159 91 714 Inorganic Solute Cotransporters AT3G15990 66.401 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00159 K17471 - gmx:100819130 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g02119 07 43047100 43055050 Gma20g00159 20 1678356 1692570 GST