Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00158 ATGGACGATGAAGTTGTTCAGCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAGCAACAGCCTTCGACTTCTTCTTCGTCTTCCTCTTCCATCCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATCCAAGAACTCCGAGAGAAAAAGGATGGCCTTGTTACGGTTGGCATTGGTGGACCAAGTGGATCTGGTAAAACAAGCTTAGCAGAAAAGGTAGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGTGTTGGAGTAGATGAAGGGAATGATTTGGATTCTATAGATTTTGATGCCCTGATCAAGAATCTTGAGGATTTGACTAAAGGCAATGATACATCAATCCCAGAGTTTGACTATCAGGAAAAGAAGCGTGTTGGCTATAAAGCAATAAAGAGCGCTTCATCTGCGGTGGTAATACTTGATGGCACATATGCATTGCAAGCAAAACTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCCTGCTTTCTAAAGTTCGCTATGACATTGGGGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAACACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTCAGAGAAGCAGTCTACAAGGTTAAATGCAGAAGTGAGTCTTCAGATGGACATTCGGGTTCTGCTTTTCAAGGAAATGAAGCCCAAACAGATAATTTTATCGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCACTTGGTGACCAGAGGATTGTTGACAAGAATTTCATCATCAGGCCTAAAGCTGAATTTGAGGTTGGTCGAATGACATTGGGTGGATTATTGGCTCTTGGGTACATTGTTGTTGTTAGTTACAAGCGTGCCTCCACAACTGTCAATAATGGCAAGGTTTCAATGTCTTTTGAAACTATTGATGTTCTTGGTGAGACGTTCATGGTGATGAGAGGAACTAATAGAAAGACTGTCAGAACAGAAGCATTAAGGATGGGTATTAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTCAGAGAAAAGGTGTACCTCGTCTTAGTACACCACCACTTGTGTCTAATACAACTGTGGCTGGTAGTCAAGAAACTGTGATCGCTGCACCAAAGCCAATTCGTGTTACCCCTAACCTTGTTACTGGGATAGATGATTTACCTCAGCCGTGGACTCGATCCCCGACAAAATCTAAAATGGAACCTGTTGCGGCTGAATGGCATTTCATATCTTCAGATTCTTCCCAGCCTGACAACTCAGTCCTAGACCCTTCATCTTTCAGGGATAGTATTAGGCTTGCTTCAATGCCTGATTCATTTGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCATTGTTGGAGAATAAAGGTGTACCAGTCATAGTTGGAATCGGAGGTCCAAGTGGGTCTGGGAAGACTAGTTTGGCTCATAAAATGGCAAACATAATTGGTTGTGAAGTAGTTTCACTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGCGCACTTGATTTATCCTTGCTATCAAAGAATATTGATGACATAAGAAATGGTCAAAGAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCCCTGCATCCTGATATTCGAATATCACTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCACATTTGATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTTCCCAAAATGAGATCATGATGACGGTGTTTCCTATGTTCCAGCAGCTTATTGAACCCCATCTTGTTCATGCACATCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCTGAGAGTTCATTATTTGTATTAAAGAGTAACAAAAAAGTAGCATATCAAGATATTGTTGCAATTCTCGATTCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATTGATATTTATATAAGGCTTCCTGGGATCCCTTCTAATGGGCAGTTGAGTGATAGTGATTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGAGAGCCTATCAAAGAAGGGAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTAGTACGGTTGCTGGTCTTCTCAATCTTGGGTACCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCCCTGGCCCATACATTCAGATAAAGGGTGCTAATAAAGATGCAGTAGCAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTATCTTGAAATAATTTTGGAAAGACTACCGGCTATAGAAAGAACTTCTGGTGGGATTCATTCTCAGCAATCAGCAAGGCTGCTAGAGATTGTTGAATTTATTCAATCTCAGGGATGTAGCTCTGCTTCAGATTCCTCATCAAGTAGGGTAGTCTCTCCAATTGAAGGAGTTATTGAGGAAATGCAATCAAAGATTAGAAGGCTTGAAAGGTGGCTAGCGATAAACACGGTTCTATGGACATTTCTGATGTCTGCCCTTGTTGGTTATTCGCTGTATCAAAGGAAGCGCCAATAA 2862 0.3994 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRVGVDEGNDLDSIDFDALIKNLEDLTKGNDTSIPEFDYQEKKRVGYKAIKSASSAVVILDGTYALQAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAVYKVKCRSESSDGHSGSAFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYIVVVSYKRASTTVNNGKVSMSFETIDVLGETFMVMRGTNRKTVRTEALRMGINGPWITKSYLEMILQRKGVPRLSTPPLVSNTTVAGSQETVIAAPKPIRVTPNLVTGIDDLPQPWTRSPTKSKMEPVAAEWHFISSDSSQPDNSVLDPSSFRDSIRLASMPDSFDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSALDLSLLSKNIDDIRNGQRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDIVAILDSAKFCSSVQKFIDIYIRLPGIPSNGQLSDSDCIRVRICEGRFALLIREPIKEGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGANKDAVAAAGSMLKLDGSYTTKSYLEIILERLPAIERTSGGIHSQQSARLLEIVEFIQSQGCSSASDSSSSRVVSPIEGVIEEMQSKIRRLERWLAINTVLWTFLMSALVGYSLYQRKRQ 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00158 953 CDD UMPK_like 65 227 - -
Gma20g00158 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 177 IPR027417 -
Gma20g00158 953 Gene3D - 64 243 IPR027417 -
Gma20g00158 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 688 IPR027417 -
Gma20g00158 953 SUPERFAMILY CYTH-like phosphatases 713 860 IPR033469 -
Gma20g00158 953 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 605 944 - -
Gma20g00158 953 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 483 605 - -
Gma20g00158 953 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 420 - -
Gma20g00158 953 Gene3D - 517 694 IPR027417 -
Gma20g00158 953 Gene3D - 705 865 - -
Gma20g00158 953 PRINTS Uridine kinase signature 518 535 - -
Gma20g00158 953 PRINTS Uridine kinase signature 545 556 - -
Gma20g00158 953 PRINTS Uridine kinase signature 639 649 - -
Gma20g00158 953 CDD UMPK_like 520 688 - -
Gma20g00158 953 SMART AAA_5 62 212 IPR003593 -
Gma20g00158 953 SMART AAA_5 517 661 IPR003593 -
Gma20g00158 953 PANTHER URIDINE KINASE 2 420 - -
Gma20g00158 953 PANTHER URIDINE KINASE 483 605 - -
Gma20g00158 953 PANTHER URIDINE KINASE 605 944 - -
Gma20g00158 953 Pfam Phosphoribulokinase / Uridine kinase family 108 224 IPR006083 GO:0005524|GO:0016301
Gma20g00158 953 Pfam Phosphoribulokinase / Uridine kinase family 520 685 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00158 Gma-Chr20 1624242 1644531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00158 513 676 PRT Gene Family AT1G55810 26.966 3.22e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00158 - - gmx:100787760 1796.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g02117 07 43015663 43032600 Gma20g00158 20 1624242 1644531 GST
Gma20g00158 20 1624242 1644531 Gma17g00785 17 6611494 6621296 PCT
Gma20g00158 20 1624242 1644531 Gma05g00157 05 1510607 1518897 PCT