Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00150 ATGGATAATAACAACAACAACTACTCCGGGTTTGTTCCCAATAATGATACTGATGATGACTGTACATTTCTCCAAACCTTGTTGGAATTGGACCCCCAACATTTCTATTTACCCACTGAAGAATTTGTTTCACTGTCCCTACAACAGCAACAACAAAATGATCCTTTTGGCGTTGAAAAGGGTAATAATGTTCCCTTCCTGCAGGGAAATAATAATAACGATTTTCCCATTGGAGAAGGAGTAGTTCCTGATGTTGTTGATGTGGAGGAAGAGGGTCCACCGAGGAGGACGGGTAAGGAACCGATCCCCGAAGGCCAAGGTGATCGATTCTTCATACATGGCCATGACATTTTTTTCTTTGGAGAAGGAGGAGTTGGTAATAACGTTGAACCCCCGCAACAGAATCAAACTCAGCCACCAAATAACCAAGATGTGAGGTCACTTTGTTCTTGGCCCCCACCACCAGAGCCATTCTCTTGCAGTTGCTGTGAAGTTCTTAGACAAATAAATTACACCAATGGTGTTAGGTTTGACAAGCTTGAGATTCATGGAGCAGTCGGGGTGATTAACCACGCAATATGCCTCGTTGAGGATAAGACATCGAATCGTCCTCCAAGGGACACTTATCAAATAATCGATTTCTGCAATAAAAACACAGAAGAAATAAGGAATTTCCTAAATGTTTACTGTAAAGAGAGGACTGAAGCAGGGTTCATTCCCATAGAAGATCCGTCGATGTCTGCCTTTTATGATGCCCTCTGCACTGGAATGGATTGGACTGAAGTTTCCAATGACGTAGACGATGATTTGGGTCCACCAAATGGCACGGAGCAAGAGTCGGAGTCTGAACCTGAGGCTGAGAATGGAAGAAGGGCTTCAACTTCTAGGCCTAGACGACGTGATATGGCAGTTCAGAGGCAGAGAGTACCAAGGATGACATTGAGTGATTTGAGCGGTGTCTTCCATTTGACTATTAGTGCTGCAGCGGTCAAACTGGACGTAGGTGACTCTACCGTGAAGAGTATCTGCCGCAGAGGAAAATTGAAAAGATGGCCCCAAAGAAAGGTGCAAAGCCTTGCCAAGAAGGTCAGAGTACTCGAAAGAGCATTGAATTCGCCAGATCCAGGGGTGAAGCGAAGAACTCTAGATGAAATTCGAAGACTTCAGCAAGAAATAATTGAGAATTGTGGTGGAATTACCCCAACCGGAATACCGATGCTCCAATTCGATGAAGAATGA 1239 0.4439 MDNNNNNYSGFVPNNDTDDDCTFLQTLLELDPQHFYLPTEEFVSLSLQQQQQNDPFGVEKGNNVPFLQGNNNNDFPIGEGVVPDVVDVEEEGPPRRTGKEPIPEGQGDRFFIHGHDIFFFGEGGVGNNVEPPQQNQTQPPNNQDVRSLCSWPPPPEPFSCSCCEVLRQINYTNGVRFDKLEIHGAVGVINHAICLVEDKTSNRPPRDTYQIIDFCNKNTEEIRNFLNVYCKERTEAGFIPIEDPSMSAFYDALCTGMDWTEVSNDVDDDLGPPNGTEQESESEPEAENGRRASTSRPRRRDMAVQRQRVPRMTLSDLSGVFHLTISAAAVKLDVGDSTVKSICRRGKLKRWPQRKVQSLAKKVRVLERALNSPDPGVKRRTLDEIRRLQQEIIENCGGITPTGIPMLQFDEE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00150 412 PANTHER RWP-RK DOMAIN PROTEIN 7 397 - -
Gma20g00150 412 ProSiteProfiles RWP-RK domain profile. 299 380 IPR003035 -
Gma20g00150 412 PANTHER PROTEIN RKD4 7 397 IPR044607 GO:0003700
Gma20g00150 412 MobiDBLite consensus disorder prediction 123 147 - -
Gma20g00150 412 MobiDBLite consensus disorder prediction 128 147 - -
Gma20g00150 412 Pfam RWP-RK domain 312 359 IPR003035 -
Gma20g00150 412 MobiDBLite consensus disorder prediction 283 306 - -
Gma20g00150 412 MobiDBLite consensus disorder prediction 264 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00150 Gma-Chr20 1540118 1541995 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00150 279 359 AtRKD Transcription Factor Family AT4G35590 31.395 9.60e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma20g00150 RWP-RK 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00150 - - gmx:102660093 801.586