Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00116 ATGAGGAAGCCTAGTTGTGATATCAAAGAATTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCGTAGATTATATCAAGAAACATGGTGAAGTTTGTTGGCGTACACTCCCCCAGGCTGCAGGTTTACATCGGTGTGGTAAAAGTTGTAGGCTGAGATGGATAAACTATCTACGTCCAGACCTCAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCCCTGCTAGGCAACCGGTGGTCACTAATAGCTGGGAGATTGCCTGGACGTACAGATAATGAAGTGAAGAATTATTGGAATTCTCATATAAGAAAAAAGCTTATTAGCAATGGCATTGACCCAAATAATCATAGATTAAACCATACAATCCCTTCCGTTTATCAGAATCCACCTATGTCTGATGATAGTTCAAAACACTTTGGCATGAAAGACAATAATAGCAAGAACGAGACAAGCAAATCACCTCGTGTTTACAACCATGGTGAAGTCTCAGATGCTGCGAGTGGTGAGGCTGAGTCATCATGTGCATTGCCAGATTTAAACCTTGATCTCTCTATTTGCGAAAAAAATCTAAAACCATTTCACGAATCTAAGTTGTCGAGGAAAGTGCCATTTGATTCCCCTTCTACACTTCTTCTGTTTCAGTAA 672 0.4048 MRKPSCDIKELNKGAWSKQEDQKLVDYIKKHGEVCWRTLPQAAGLHRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRKKLISNGIDPNNHRLNHTIPSVYQNPPMSDDSSKHFGMKDNNSKNETSKSPRVYNHGEVSDAASGEAESSCALPDLNLDLSICEKNLKPFHESKLSRKVPFDSPSTLLLFQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00116 223 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gma20g00116 223 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Gma20g00116 223 SMART sant 12 62 IPR001005 -
Gma20g00116 223 SMART sant 65 113 IPR001005 -
Gma20g00116 223 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gma20g00116 223 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Gma20g00116 223 CDD SANT 68 111 IPR001005 -
Gma20g00116 223 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gma20g00116 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gma20g00116 223 CDD SANT 15 60 IPR001005 -
Gma20g00116 223 Gene3D - 5 65 - -
Gma20g00116 223 MobiDBLite consensus disorder prediction 122 143 - -
Gma20g00116 223 Gene3D - 68 164 - -
Gma20g00116 223 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 222 - -
Gma20g00116 223 MobiDBLite consensus disorder prediction 122 173 - -
Gma20g00116 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Gma20g00116 223 PANTHER MYB-LIKE TRANSCRIPTIONAL FACTOR MYB76 2 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00116 Gma-Chr20 1163690 1165164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00116 2 194 MYB Transcription Factor Family AT4G09460 55.224 2.64e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma20g00116 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00116 K09422 - gmx:100818783 469.929