Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00113 ATGACGAACGCAGAGGGAGAAGAGAAAGCTTTTGTTTGTCAGTCAGCAGAGCGCGCGGGGGAAAGAGGGTTTTTGGCCTTTGGGTTTTATAAAGAAAGCGTCGGTAAAGCTGGTGGTGACAAATGGAAATCGCTGTCTGATGCTGAAAAGGCCCCCTTCGTTGCTACGGCCGAAAAGAAGAAACAAGAGTATGAGAAAACTATTTTGGCTTACAATAAGAAATTGGAGGGGAAGAATTCAGAGGAAGACGAGTCTGACAAGTCAAAGTCTGAAGTCAATGACGATGAGGAAGATGAGGTAGATTGA 306 0.451 MTNAEGEEKAFVCQSAERAGERGFLAFGFYKESVGKAGGDKWKSLSDAEKAPFVATAEKKKQEYEKTILAYNKKLEGKNSEEDESDKSKSEVNDDEEDEVD 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00113 101 SUPERFAMILY HMG-box 34 79 IPR036910 -
Gma20g00113 101 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 33 72 IPR009071 -
Gma20g00113 101 MobiDBLite consensus disorder prediction 72 87 - -
Gma20g00113 101 Coils Coil 54 81 - -
Gma20g00113 101 MobiDBLite consensus disorder prediction 72 101 - -
Gma20g00113 101 Pfam HMG (high mobility group) box 34 72 IPR009071 -
Gma20g00113 101 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 33 99 IPR031061 -
Gma20g00113 101 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 33 99 - -
Gma20g00113 101 Gene3D High mobility group box domain 7 97 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00113 Gma-Chr20 1121303 1124502 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gma20g00113 HMG_box 6.5e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00113 K25507 - gmx:113000769 159.458