Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00111 ATGATTGGAGGCAAAGATCTTGTTCCCAATGGCGTTGACTCCGAGAGTGAGAACTCAAGGAACAAGGTGCAACAACATCAGCAGCATCATGGTTTTGCTCATGCTAACAAGGAACACCCTCAAGAGAAAAAACCGAGTTTTGATGAGTTTCGGTCAACAACACCCTCAAAGTTTGCCACTTCTGGGATGCAAGAATTGACCCTCAGCTATCTCTGTGAGAATCCAAAATTGGGTCTTGCTGAGAGAGAGGTTGGTGATAGAAGCTTGGTGAAGGGCAAAGAAGTTGTTGTTTATGGGAATTCAGATCAAGATGAGAAATGCCAATCTGGGTTGGGTCTGACAGAAGGGGTTAGTCTCTCGCAGCGTGACGAATTAAGATTTAAAACGTCGTTGGGAGAGGTGTCCCCGTTTAGTGTGCAACAGTACTTCGAACAGAATTGTCTTCGAAGGAAGATATCCGTGGGAAACCAAAACCAAAAGCAAGATCAAGATGAGAAATGGGTAGAGAGGGATTTCTTGAGTTTGAGTGAGACAAGGGAGAATTCTTCAAAGAGATCCATGGAGGAAGAGTGTGAAAGGGAGACGAATGGTGGCAGCAAGAAGCAGAAGCTTGAGACTCTTAGCCTCTCTCTTGCTTTGCCTGATGTGTCGCTCTCTCTCACAGCCTCCAACGCTTTGCAAAATGGCGACCAACTCGTTAGGCCAAAGCCTAGTAAGCCATCCACAAGGACCACAACTACTATCAATTCATGTTCAAATGATTACACAGCAGCTTCTGTGTCTCACTCTTACTCTCACCCTTTCTCACACAACCAAAGTTGCTCACTCACCCGAAATTCGACCGAGAATTTCGAGTACTCACACAGCAAAGATGATCAAATTTGGCATTGTGGGGAGGGGACTAATGGCTCGGTTCATAGCAGGTTCAAGCCAATTGGAGATGGGGTTGCTTTGGTCAATCATTCCTTCATGCAAGGGAATAGTCAGTATAAGGCTACTAGCTCAGAAAACCAATCTGTTTTCCCTTCAGAATTGCCTGCAAGAATGAGATTTGAAGCCAAGTCAGAGGGCTCAAGAGGAAAGAATTCTGGGAATTTAAGAGGGTTGGAAGGTGTGGATGGTGGGAAAATGAAATTTTCTACATCAGAGAGAGTTCTAAGAGAGATTGTGTCTGAGTCTATCCCAGCCATGGCATTGACATTTCAGGAGTTCACTGAAGAAGTCATAACTTCAATTAAGGAATACCTGAAAGGTCTCATTGAAATGCCAGAGAAGAAAGGAGAACTAGAGAGCCTCCAGAACCGGCTCGGCCGAAGATCTGACCTCACCAGAGAGACTCTTTCAAAGTGTCATAAGCAGCAGCTGGAGATTTTGGCTGCTATCAAGATGGGGCTTGGGAGCTTCTTGTCCGGTAAGTTCCAATTCGCGGAGACAGTGGATGTTTTCTTGTACATGAGGTGTAGAAATGTGAACTGCAAGAGCTTGCTTCCTATTGATGACTGTGACTGCAAGATGTGTTCAGGAAATAAGGGGTTTTGCAGTTCTTGCATGTGTCCTGTTTGTATGAGCTTTGATTATGCAAGCAACACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCTCACTGGTGTCATGCTGCATGTGCCATTCAGAGGAATCTAATCAAACCTGGGCCTAGTTTGAAGGGTCCTTCTGGGACCTCTGAGGTGCAGTTTCATTGTATTGGCTGTGGACATACTTCAGAAATGTATGGTTTTGTCAAAGATGTCTTTGTGTGTTGTGCCAAGGATTGGGGGCTAGAAACCTTGGCGAAAGAGCTTGACTGTGTGAGGAGGATTTTCCGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATATTAAAACCGAAGATATGCTGTTAAAGCTTCAAGCTAAACTGGTTTCTCCTTTAGATGCCTGCAACCACATCATACAGTTTTTCAACTACGTGGATGGCGTGTCAGACTTTCCTGCTTCTGCTATATCCTCAAAGGATTTGTCAACATCTAAGGCTAACCTTGCAATGGACACAACAACATCATCTCTTCCACAATCTACTTCTCTAATACAAAAATACACTTATGACATGAGCTACACTAGGTCAAATGATCTTCAACAAAAAGACCTCAAATCCTCCCTCTTAAGTGAACATAAAAATGAGAGTGATTTCCACTTAGAGGCTCTATTAGGGAAAGGAGGAGGGCTTGAAAGCTTGGAGAGCATCGTGCGGATAAAAGAGGCCGAAGCGAGAATGTACCAAAACAAGGCAGATGAGGCAAGGAGAGAGGCAGAAGGGTTCCAGAAGATGATCAAGACAAAGGCTGCACAGATGGAAGAAGAGTATGCAGAAAGGATTGGCAAGATTTGCTTGAATGAGGCAGAGGAAAGGAGGAAGAACAAATTTGATGAACTCAATGTCTTGCAAAATTCCCACTACGATTACTTCAACATGAAAAGCAGAATGCAAGATGAGATCCATGGTTTGTTGAAGAGAATGGAAGCAACAAAGCACCAACGGGTTTAA 2541 0.4416 MIGGKDLVPNGVDSESENSRNKVQQHQQHHGFAHANKEHPQEKKPSFDEFRSTTPSKFATSGMQELTLSYLCENPKLGLAEREVGDRSLVKGKEVVVYGNSDQDEKCQSGLGLTEGVSLSQRDELRFKTSLGEVSPFSVQQYFEQNCLRRKISVGNQNQKQDQDEKWVERDFLSLSETRENSSKRSMEEECERETNGGSKKQKLETLSLSLALPDVSLSLTASNALQNGDQLVRPKPSKPSTRTTTTINSCSNDYTAASVSHSYSHPFSHNQSCSLTRNSTENFEYSHSKDDQIWHCGEGTNGSVHSRFKPIGDGVALVNHSFMQGNSQYKATSSENQSVFPSELPARMRFEAKSEGSRGKNSGNLRGLEGVDGGKMKFSTSERVLREIVSESIPAMALTFQEFTEEVITSIKEYLKGLIEMPEKKGELESLQNRLGRRSDLTRETLSKCHKQQLEILAAIKMGLGSFLSGKFQFAETVDVFLYMRCRNVNCKSLLPIDDCDCKMCSGNKGFCSSCMCPVCMSFDYASNTCSWVGCDVCSHWCHAACAIQRNLIKPGPSLKGPSGTSEVQFHCIGCGHTSEMYGFVKDVFVCCAKDWGLETLAKELDCVRRIFRGSEDRKGKELHIKTEDMLLKLQAKLVSPLDACNHIIQFFNYVDGVSDFPASAISSKDLSTSKANLAMDTTTSSLPQSTSLIQKYTYDMSYTRSNDLQQKDLKSSLLSEHKNESDFHLEALLGKGGGLESLESIVRIKEAEARMYQNKADEARREAEGFQKMIKTKAAQMEEEYAERIGKICLNEAEERRKNKFDELNVLQNSHYDYFNMKSRMQDEIHGLLKRMEATKHQRV 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00111 846 MobiDBLite consensus disorder prediction 178 200 - -
Gma20g00111 846 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 400 422 IPR004082 -
Gma20g00111 846 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 478 499 IPR004082 -
Gma20g00111 846 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 524 544 IPR004082 -
Gma20g00111 846 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 439 454 IPR004082 -
Gma20g00111 846 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 597 616 IPR004082 -
Gma20g00111 846 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 742 762 IPR004082 -
Gma20g00111 846 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 781 803 IPR004082 -
Gma20g00111 846 Pfam Coiled-coil region of Oberon 707 835 IPR032535 -
Gma20g00111 846 Coils Coil 796 816 - -
Gma20g00111 846 PANTHER PROTEIN OBERON 3 1 845 - -
Gma20g00111 846 MobiDBLite consensus disorder prediction 1 55 - -
Gma20g00111 846 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 845 IPR004082 -
Gma20g00111 846 CDD PHD_OBE1_like 517 576 - -
Gma20g00111 846 Coils Coil 741 775 - -
Gma20g00111 846 MobiDBLite consensus disorder prediction 31 50 - -
Gma20g00111 846 MobiDBLite consensus disorder prediction 228 247 - -
Gma20g00111 846 Pfam PHD - plant homeodomain finger protein 487 611 IPR032881 -
Gma20g00111 846 MobiDBLite consensus disorder prediction 178 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00111 Gma-Chr20 1104093 1108012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00111 487 616 PHD Gene Family AT5G57380 23.846 1.03e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00111 - - gmx:100816647 1664.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01671 07 34948765 34953643 Gma20g00111 20 1104093 1108012 GST