Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00102 ATGACTGTGGATGAAGTGGATAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCATTGGCAACTCATCCGGAAGATGACTCAGATCGTTGGGAGAAGATTGCCGCTGATGTGCCGGGGAAGACTAtagaagaaatcaaacagcattatgagctcttggttgaagatattaaccagattgaatccggttgcgtgcctcttccatcttataattcttcttcagagggctcaacaagccatgccagtgatgaaggagctggcaagaagggcagcggtcctgggcattatagcgGATTACTTTTTCTGGGGCATAGGGGAAGTCCCATCATTGGGGTGAGGCCTACAAGATCCTCCACTAGGAGACCCAAGGGAGGGGGAAAGGGGGTTAGTGTATCAGGATTGAACCTTTCACCCCAAGTACATCAGAAACACCATATGCCACTAAGCCAAAGGCTCTGGCGTACTCTCTTTAACCAGAGTCTCACGTTGGACTTTCTGTATAAGCTCTTTTGCAACCCTAGGTTATTTCTTCTGGGCTTGGATAAGTATGGAAAAGGAGACTGGCGAAGCATATCAAGGAACTTTGTGGTGACACGAACTCCTACACAAGTAGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCAATGAACAAAGATAGAAGGCGATCCAGCATACATGATATCACCAGTGTTAACAATGGAGATATTTCAGCACCTCAAGGGCCAATAACCGGTCAAACAAACGGTTCTGCTGGAAATTCTACTGCCAAAGCAGCCAAAGCGGCCACCCCGGCCTCAACTGGGGTGCCAGGTGTTGGAATTTATGCAGCTCCAACCATTGGACAACCTATAGGAGGACCCTTAGTATCTGCTGTTGGCACCACAGTGAACCTTCCTGCACCTGCACACATGGCATATGGGGTCCGAGCCCCAGTACCCGGTGCAGTTGTACCTGGTGCACCGGTAAATATGGGCCCTGTGACGTACCCTATGCAGCATACGTCTGTTCCTCACAGGTGA 1038 0.4123 MTVDEVDSSSEWSREQDKAFENALATHPEDDSDRWEKIAADVPGKTIEEIKQHYELLVEDINQIESGCVPLPSYNSSSEGSTSHASDEGAGKKGSGPGHYSGLLFLGHRGSPIIGVRPTRSSTRRPKGGGKGVSVSGLNLSPQVHQKHHMPLSQRLWRTLFNQSLTLDFLYKLFCNPRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNGSAGNSTAKAAKAATPASTGVPGVGIYAAPTIGQPIGGPLVSAVGTTVNLPAPAHMAYGVRAPVPGAVVPGAPVNMGPVTYPMQHTSVPHR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00102 345 CDD SANT 11 58 IPR001005 -
Gma20g00102 345 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Gma20g00102 345 Pfam Myb-like DNA-binding domain 179 216 IPR001005 -
Gma20g00102 345 SUPERFAMILY Homeodomain-like 11 65 IPR009057 -
Gma20g00102 345 Gene3D - 5 71 - -
Gma20g00102 345 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Gma20g00102 345 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Gma20g00102 345 MobiDBLite consensus disorder prediction 1 38 - -
Gma20g00102 345 CDD SANT 178 216 IPR001005 -
Gma20g00102 345 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 178 218 IPR006447 GO:0003677
Gma20g00102 345 SUPERFAMILY Homeodomain-like 178 221 IPR009057 -
Gma20g00102 345 MobiDBLite consensus disorder prediction 115 136 - -
Gma20g00102 345 Gene3D - 177 222 - -
Gma20g00102 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 220 IPR017930 -
Gma20g00102 345 SMART sant 171 218 IPR001005 -
Gma20g00102 345 SMART sant 8 60 IPR001005 -
Gma20g00102 345 MobiDBLite consensus disorder prediction 233 262 - -
Gma20g00102 345 MobiDBLite consensus disorder prediction 72 95 - -
Gma20g00102 345 PANTHER TRANSCRIPTION FACTOR SRM1 10 340 - -
Gma20g00102 345 MobiDBLite consensus disorder prediction 8 38 - -
Gma20g00102 345 MobiDBLite consensus disorder prediction 227 262 - -
Gma20g00102 345 PANTHER TRANSCRIPTION FACTOR KUA1 10 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00102 Gma-Chr20 1013413 1021508 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma20g00102 Myb_DNA-binding 3.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00102 - - gmx:100797809 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01692 07 36001227 36002990 Gma20g00102 20 1013413 1021508 GST