Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00070 ATGAGCACCACCGAGAGTCAAAGATATAAGGGCACAGTGAAATGGTTCAACGAGGAGAAGGGTTTCGGTTTCATAACTCCCGAAGATGGTGGCTCTGATCTCTTCGTTCACTACAGTGCGATCCAAACCGACGGCGGCTTCCGCACCTTGTCGGAGGGTCAGTCAGTAGAGTTCCTCGTCACTCAGGACGACAGCGGGCGAGCCGCGGCCGTCAACGTGACGACCACCACGGTTAAATCTAGTGACAGCGaaacgaccacaatcattgtttcctcacccgagtgtgtcaaagagataatgaaaacccatgatgttgtctttgcatcaaggcctcaaagtgcaacatttgatatattgtactatgaatccacaggtattgcttctgcaccctatggaaattattggagagtgatacgaaggatgtgcacgatagagcttttcacccaaaagcgtgtaaattatttccaaccaataagagaagaagagCTCTCTTATCTCATCATCAAAATTATTGATTATTCACACAAAGGATCATCATCATCACCCATCAATGTTTCTCAAATGGTGCTTTCATCAATATATTCCATCACCTCAACAGTTGCTTTTGGCAAGAACTACAAAGACCAAGAAGAGTTCATATCACTAGTGAAAGAAGAAGTTGAGATTGCAGGGAGAGATTTGTATTGTTCTGCTAGATGGCTTCAACTTGTCACTGGTCTCAGAGCTAagcttgaaaagttgcatcgacaaatggatagggttctcgaaaacatcatcattgaacataaagaagcaaagtcaggagctaaggaaggccaatgtgaacaaaagaaggaagatttggtcgatattctcCTAAAATTTCAGGATGGTAGTGACAAGGATATTTGTTTAACCAATGGCAAATTCAAAGGTATAATCCAGgatatctttgttggtggaggtgacacatcagcaattacaatagattgggcaatggctgagatgtaa 990 0.2535 MSTTESQRYKGTVKWFNEEKGFGFITPEDGGSDLFVHYSAIQTDGGFRTLSEGQSVEFLVTQDDSGRAAAVNVTTTTVKSSDSETTTIIVSSPECVKEIMKTHDVVFASRPQSATFDILYYESTGIASAPYGNYWRVIRRMCTIELFTQKRVNYFQPIREEELSYLIIKIIDYSHKGSSSSPINVSQMVLSSIYSITSTVAFGKNYKDQEEFISLVKEEVEIAGRDLYCSARWLQLVTGLRAKLEKLHRQMDRVLENIIIEHKEAKSGAKEGQCEQKKEDLVDILLKFQDGSDKDICLTNGKFKGIIQDIFVGGGDTSAITIDWAMAEM 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00070 329 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Gma20g00070 329 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Gma20g00070 329 PRINTS Cold shock protein signature 48 66 IPR002059 GO:0003676
Gma20g00070 329 Gene3D - 1 74 IPR012340 -
Gma20g00070 329 Pfam 'Cold-shock' DNA-binding domain 10 75 IPR002059 GO:0003676
Gma20g00070 329 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g00070 329 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g00070 329 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g00070 329 PRINTS E-class P450 group I signature 322 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g00070 329 ProSiteProfiles Cold-shock (CSD) domain profile. 8 75 IPR002059 GO:0003676
Gma20g00070 329 Pfam Cytochrome P450 83 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g00070 329 Gene3D Cytochrome P450 75 329 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g00070 329 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Gma20g00070 329 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Gma20g00070 329 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 84 329 - -
Gma20g00070 329 PANTHER CYTOCHROME P450 71B11-RELATED 84 329 - -
Gma20g00070 329 Coils Coil 237 257 - -
Gma20g00070 329 SUPERFAMILY Cytochrome P450 85 329 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gma20g00070 329 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
Gma20g00070 329 SMART csp_8 10 76 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00070 Gma-Chr20 781736 783984 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00070 87 329 Cytochrome P450 AT3G48310 33.333 1.28e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gma20g00070 p450 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00070 - - gmx:100818520 307.375