Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00055 ATGGATCAAGTTGCTCCTCCTCCGATTCTCATGCACCGCAAGCGCGATCTCTCCTACGCCGTCGTTTCGCCTGCTCCCAACCCGAGCTGGAGCTGGGACTGGGACAGCGTGCGTTTCGCCGGCAAACCACCGCCACCACTCTCCTCCCCAAACGACGACGTCGTTTTTGAGGAGAGTGTTGCGCCGCCTCTGCAGTTAAACCTCGGGGGAAGGACGAACAACAGCAACAGCAACAAGAGAGTTAGGTCAGGGTCCCCCGGAACGTCGTCGTATCCGATGTGCCAGGTGGACAACTGCAGAGAGGATCTGTCGAAGGCGAAGGACTATCACCGGAGACACAAGGTGTGTGAGGCTCATAGCAAGGCCTCCAAAGCGCTTCTCGCGAATCAAATGCAAAGATTCTGCCAGCAGTGTAGCAGGTTTCATCCTCTCTCGGAGTTTGATGAGGGGAAGCGGAGCTGCCGCCGGAGACTCGCCGGACACAACCGGCGCCGGCGGAAGACGCAGCCCGAGGATGTTACCTCGGCGACTCCCGCGCCAGCCGCCGCCGCGAATTTGGAAATCTTCGACTTGTTGACTGCCATAGCTGGAGCTTCGCAGGATCTTGCAACCAAGTTGCTGGATGCTGGCAGTGGCAATGTTAATGGGAAAAAAGATCAAGTGCAATTGCAGACACCATCCTCCTATCAACGTCACGAGTCTCATGACCAACTGAACCACACCCCGGCTGCCCCATTAACTATGGACTTGCTTGCTGTTCTTTCCACCACTCTTTCTGGGGGGTCTGCCCCTGATGCCAGTGCGTCGCCCTCTCAAAACCACAGCTGCAACAGTGATGGTGGCAGTGCTGACCAGACGAGACAACAGCAATTCTTTTCGGTTGGTGGGGAAAGAAGCAGTAGCAGTTCCCGGTCTCCGGTTGAAGATTCAGACTGTCAGGAGGATGTTCGTGTTAATTTACCACTGCAACTCTTTAGCTCCTCACCGGAAGATGACAGCCTGCCTAAACTAGCATCTTCTAGAAAGTATTTCTCGTCTGACAGTAGTAACCCTGCTGAAGAGAGGTCCCCATCGTCTTCTCCTGTTGTGGAGATGCTGTTTGATTTGCAGGGTGGGGCTAGAGGTCTCAAGCCAGAGAGCATATCCTCTGGAAGAGAAGTTATTGCTAATAAGGAAGCTAGCCAAAGTCATAGTTCTAATATCTCTCTTGATTTGTTTAAAGGGTCAAATAACAGGATCCAACAACCTAGTTCACTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGCACTGGGAGAATAATGTTTAAACTATTTGACAAGCATCCCAGCCATTTCCCAGGAACACTGAGAGCACAGATTTACAATTGGCTATCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGACTGGGAGAAACTAGAAGAAAACTTCCTTCAACATGTTCATTCTTTAATTCAAAATTCAGATTCCGATTTTTGGAGAAATGGAAGGTTTCTAGTTCATTCTGGCAGTCAGTTTGTTTCACACAAAGATGGGAAGATACGCATATGCAAACCATGGAGAACATGGAAGTCACCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCAGGCACAAAGATTCACTGTACAGGTACCGGCTCTTACGCATCGGCAGAAGTAATAGGATCTGCATATTCTGGTGTGATGTATGATAAGATAAAGTTGAGTGCTTTTAAAGTTCAGGATGTATCGCATGGTGTTCTGGGTCGCTGTTTTATTGAGGTTGAAAATGGTTTCAAGGGCAACAGTTTTCCAGTGATAATAGCTGATGAGACCATTTGCAAGGAATTGAGACCACTTGAGTCTGAATTTGACGAGGAGGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAACATCATTTTGGAAGGCCAAGATCAAGGGAGGAGGCTTTGCATTTCTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGATTCTCATATGTGCATGAGGTTCCATATTATTCGCTTGACAGGTTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGCATGCTAGTCAAAACCCTTCTGGATGTGCTGGTTGGTAAACACTTGCAAGGGGAATGGTTGTCAACAGGGTCAGTGGAGATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAGGAAAGTACGTTGGCATGGTTGATTTGCTCATCCACTATTCTATACCAAGCAACAATGGTACATCCAGGAAATACGTATTTCCACCGAATCTTGAGGGTCCTGGTGGTATTACACCCTTGCACTTGGCAGCATGCACATCTGGTTCTGAGAGTGTCGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGGTTGAAGTGTTGGGAATCCCTTGTGGATGCAAACGGACAGACTCCACATGCCTATGCCATGATGAGGAATAATGACTCATATAATGCGCTGGTTGCCCATAAACTTGCTGATAGACGAAGGGGTGAAATTTCGGTAACAATTGAGAATGCGATAGAGCAACAGTCACTGAGAGTGGAGCTTAAAGAAAAGCAAAGTAACTTAGTCAAACGTGGTCAGAGTTCTTGTGCCAAGTGTGCGAATGCAGAATTTCGCTTCAACAGAAGAGTTCCAGGTTCACACGGTTTGCTTCACCGCCCCTTTATTTATTCAATGCTAGCTGTTGCAGCTGTTTGTGTATGTGTTTGCGTGTTCTTCCGTGGACGCCCTTTTGTTGGCTCAGTTGCTCCCTTCAGTTGGGAAAATCTGGATTATGGCACAATGTAA 2949 0.4744 MDQVAPPPILMHRKRDLSYAVVSPAPNPSWSWDWDSVRFAGKPPPPLSSPNDDVVFEESVAPPLQLNLGGRTNNSNSNKRVRSGSPGTSSYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAAAANLEIFDLLTAIAGASQDLATKLLDAGSGNVNGKKDQVQLQTPSSYQRHESHDQLNHTPAAPLTMDLLAVLSTTLSGGSAPDASASPSQNHSCNSDGGSADQTRQQQFFSVGGERSSSSSRSPVEDSDCQEDVRVNLPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPAEERSPSSSPVVEMLFDLQGGARGLKPESISSGREVIANKEASQSHSSNISLDLFKGSNNRIQQPSSLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLSIYASMSSADWEKLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSQFVSHKDGKIRICKPWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYASAEVIGSAYSGVMYDKIKLSAFKVQDVSHGVLGRCFIEVENGFKGNSFPVIIADETICKELRPLESEFDEEEKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPYYSLDRFKFVLTFAVERNCCMLVKTLLDVLVGKHLQGEWLSTGSVEMLNAIQLLNRAVKGKYVGMVDLLIHYSIPSNNGTSRKYVFPPNLEGPGGITPLHLAACTSGSESVVDSLTSDPQEIGLKCWESLVDANGQTPHAYAMMRNNDSYNALVAHKLADRRRGEISVTIENAIEQQSLRVELKEKQSNLVKRGQSSCAKCANAEFRFNRRVPGSHGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENLDYGTM 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00055 982 Gene3D - 84 155 IPR036893 GO:0003677|GO:0005634
Gma20g00055 982 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 982 IPR044817 GO:0003677
Gma20g00055 982 SUPERFAMILY Ankyrin repeat 729 876 IPR036770 -
Gma20g00055 982 MobiDBLite consensus disorder prediction 215 232 - -
Gma20g00055 982 Pfam SBP domain 94 167 IPR004333 GO:0003677
Gma20g00055 982 MobiDBLite consensus disorder prediction 211 240 - -
Gma20g00055 982 MobiDBLite consensus disorder prediction 259 362 - -
Gma20g00055 982 MobiDBLite consensus disorder prediction 320 357 - -
Gma20g00055 982 MobiDBLite consensus disorder prediction 65 92 - -
Gma20g00055 982 Gene3D - 724 911 IPR036770 -
Gma20g00055 982 SUPERFAMILY SBT domain 92 172 IPR036893 GO:0003677|GO:0005634
Gma20g00055 982 MobiDBLite consensus disorder prediction 259 307 - -
Gma20g00055 982 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 31 982 - -
Gma20g00055 982 MobiDBLite consensus disorder prediction 66 92 - -
Gma20g00055 982 MobiDBLite consensus disorder prediction 158 179 - -
Gma20g00055 982 MobiDBLite consensus disorder prediction 414 444 - -
Gma20g00055 982 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00055 Gma-Chr20 640393 646462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00055 1 982 SBP-box Gene Family AT1G20980 51.233 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma20g00055 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00055 - - gmx:100812180 1913.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01484 07 20560432 20566651 Gma20g00055 20 640393 646462 GST