Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00050 ATGGGTAGTTGTGGAAGAGAAGGTGTAGTGAGGCAGTATATAAGATCAAAGGTTCCTCGTTTAAGATGGACCCCTGAGCTTCATCGTTGCTTTGTTTATGCCATTGAAACCCTTGGAGGTCATCACAAGGCTACTCCTAAGCTTGTTCTTCAACTGATGGATGTTAAAGGGCTCACAATTTCACACGTCAAGAGCCATCTGCAGATGTACAGAAGCATGAAAGGTGACTCGTGCAGACAAGATAGGACTTCTACCCAACATAGGAAACAATCTTTTCAGAAGCATGATGAAGCGAGTGATGTTGGTTTTCACTCTTGCTTCAAATTCATTAGAAAAGAATCTGATTCCCTCTCCGGCTACAGTAATTTCTCCTCAAAAAGAACTAGAATCGAGAAGACAAGTTTACTCTCAGGAATCCTACAATGCAGCCAAAGAATATGTGAAGCAGATCCAAATCCATACACTACTTTTTATGATTACCTGCAGAGCATGGCTAAGGAGAAGGGAATAAAGAAGATTTGTGTTGGTTCAATATGGCAGCAGACTCAACCCCTTTCCACAACCTTTCATATGCTAACAAAGCAAGAATCAGATTTGCTCCAGGTTGCCAAATTAAATGATAAGCAGCCTTTGAATGAAGTAGGGAACACTTGGAGAAAAGGACTAGGAGCAGAGAATGAAGACATAGGAGGTTGTGAATTGTCATTGTCAATCACATTGCCACAACCCCATCCTTCCTCACAGAAAAGTAATACTTCTTCAGTCAGTGAGACCAGTGAGGCATTTTCATTGTGCCCTGAGTTTAGCAACAACGTTATCATGGGCTGTTCTAGTTCTTCCAATGTCCCAAAAACAATTAATTTGGACCTTTCTTTGGCCATTTGA 885 0.4124 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMKGDSCRQDRTSTQHRKQSFQKHDEASDVGFHSCFKFIRKESDSLSGYSNFSSKRTRIEKTSLLSGILQCSQRICEADPNPYTTFYDYLQSMAKEKGIKKICVGSIWQQTQPLSTTFHMLTKQESDLLQVAKLNDKQPLNEVGNTWRKGLGAENEDIGGCELSLSITLPQPHPSSQKSNTSSVSETSEAFSLCPEFSNNVIMGCSSSSNVPKTINLDLSLAI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00050 294 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 187 294 - -
Gma20g00050 294 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 167 - -
Gma20g00050 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Gma20g00050 294 MobiDBLite consensus disorder prediction 77 96 - -
Gma20g00050 294 Gene3D - 18 74 - -
Gma20g00050 294 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Gma20g00050 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Gma20g00050 294 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Gma20g00050 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 167 IPR044848 GO:0003700
Gma20g00050 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 187 294 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00050 Gma-Chr20 617495 621830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00050 1 71 G2-like Transcription Factor Family AT1G14600 73.684 1.68e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma20g00050 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00050 - - gmx:100796564 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01474 07 20205325 20209916 Gma20g00050 20 617495 621830 GST