Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00049 ATGGCAGCACCTTTTTCTGCAGCATCGCTCTTTGCAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAACACCATCATCATCAACCACTCCAGCTGCACCACCACCCCAGAAGAAAAGAAGAAACCAACCAGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCCAAGACTCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAAAAGACCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAGGCACACTCCAAAACCTGTGGCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGaagagacagtttcatcacacacagagccttctgtgatgctttggcacaagaaagtGCAAGAGAGGCACCAAACCTGAGCAGTGCCATTGGCAACCAACTGTATGGAAACAGCAACAACATGTCCTTAGGCTTATCTCAAATCCCTTCCATCCATGACCAAAACCCTCAACCTAGTGAACTAATGCGTTTTAGTGGTGCGCCAAGGGCTGGTCAATTTGACCACATTCTCCCACCCAACATTGCCTCATCATCACCCTTTAGACATTCCATGCAAACCCCTCCATTCTTCTTGCAAGAATCAAACCAAACCTACCATGACTCAAACAAGCCATTCCAAGGACTGATACAATTATCTGACCTAAACAACAATAACCCTTCTGCCTCCAACCTCTTCAACCTTCCTTTTCTTTCCAACCGTGCCATCAACAGCAACAACTATTCTGAGGAACAACAATTCAACACTGCTGAAGGGTCCAATTTCTTCTCAGAAGGCACCATGAATATTGGCAGTACTGATCACCAAACTAGCTCCACCACTGTCCCTTCTCTCTTCAGCACCAATTCCCTTCAAAACAACCACCTTTCTCACATGTCCGCAACTGCACTGCTTCAAAAAGCTTCTCAAATTGGCTCTGCAAGTTCAAGCAACAGCATCAACATCAACAACACCACCACCACCAACAACAACACTAGTGCCTCCTCTCTTCTTAGAAGCTTAGCATCAAAATCTGATCATCAGAGGCAACTCGGTGGTGGTGGTGCTGCTGCAAACTATGCAACCATCTTCAACAACAGTGTTCAGGAAATGATGAACATTTCAGGGTTTGAAGCATATGATCATCATGGTGGCATGAACAAAGAACAAAAACTCGGTGGTGTTGGAGGCTCTGATAGGCTCACAAGGGACTTTCTAGGAGTTGCACAACAACAACAGCGAGAAGGGTTTAACTTGATGAGTTCTTTGGAAGCAGAGACAAACAATAACGCTGCGCCGTCAGGTCAATCTTTTGGAAGTGGTGGGAACTTTCAGTGA 1581 0.4402 MAAPFSAASLFAIREEDQNQMKQQHSSTPSSSTTPAAPPPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGREYRCDCGTLFSRRDSFITHRAFCDALAQESAREAPNLSSAIGNQLYGNSNNMSLGLSQIPSIHDQNPQPSELMRFSGAPRAGQFDHILPPNIASSSPFRHSMQTPPFFLQESNQTYHDSNKPFQGLIQLSDLNNNNPSASNLFNLPFLSNRAINSNNYSEEQQFNTAEGSNFFSEGTMNIGSTDHQTSSTTVPSLFSTNSLQNNHLSHMSATALLQKASQIGSASSSNSININNTTTTNNNTSASSLLRSLASKSDHQRQLGGGGAAANYATIFNNSVQEMMNISGFEAYDHHGGMNKEQKLGGVGGSDRLTRDFLGVAQQQQREGFNLMSSLEAETNNNAAPSGQSFGSGGNFQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00049 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Gma20g00049 526 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Gma20g00049 526 SMART c2h2final6 147 167 IPR013087 -
Gma20g00049 526 SMART c2h2final6 112 142 IPR013087 -
Gma20g00049 526 SMART c2h2final6 71 93 IPR013087 -
Gma20g00049 526 MobiDBLite consensus disorder prediction 396 428 - -
Gma20g00049 526 Gene3D Classic Zinc Finger 125 204 - -
Gma20g00049 526 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 492 - -
Gma20g00049 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 492 - -
Gma20g00049 526 MobiDBLite consensus disorder prediction 396 435 - -
Gma20g00049 526 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Gma20g00049 526 Gene3D Classic Zinc Finger 54 119 - -
Gma20g00049 526 MobiDBLite consensus disorder prediction 1 55 - -
Gma20g00049 526 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00049 Gma-Chr20 597782 605830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00049 41 491 IDZ Gene Family AT2G02070 49.803 5.21e-125 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma20g00049 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00049 K25870 - gmx:100818072 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g01472 07 20043493 20052890 Gma20g00049 20 597782 605830 GST