Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00031 ATGGGATGCCAACTGGAGATTAACACAGCTGAGAGGCAGCAGCTGGAGATCAACACAACTAAAAAGTTTAAACACCTGGAGATTGATGTTGCCGGAGGATTTTGTGAAGTTGCCAAAAAAGAGGCCAAGACCCTAGTAGCCAACCAAACCCCTGAAAGTGGCTCTTATCATTCTGTTCCTGTCATTTTGATCTGCAACGTAAAATTCCTGATGGGCAATAAATCAGATCCCAAAGCTGGTGCTACTGCTGTGCCCCCTCTCCGAATTGGGAAGAGAGAGGGTGAGAATGAAGATGAGCAGCAAGTGACTGCAAAGAAGCAGAAGAGAGATGAGGTTGCAGAGGAGCAAAGGATTATGGATGAAATTGTTTCAGATGATTCCTTCGCAGATTTTGAACCAGATAAGAATTCTGAAGCTAAAAAAGACTCCCTCAGTAAACAGGAGAAGAAAGGAAAACCTGATAGTGCTAACTGTTCCAGTTCTTTGGAGTCATTGGCTGATGGTTCTGAGGAGGATGCAGGGAATATGGATATTGATGAGGGTTATAATTCTGAAGAATGTAGTGAAGGAACACAAGAGAAGATGCAAGTTTTGCCTGTAAAAAGTTCAGAGAACAGTGAGAAAGGAATTGAGGAAAAAGACTCTAAAGCTCCTCAAGAAAATCCTAAAATGCTATCTACACCAAATGAACGAAATGCTGGATCGAAGACAATAGTAACTAGAAACTTGTCATACAGTGTGGAACGAGCTGATTTGGAAAATCTTTTCAAACCGTGTGGAGAAGTTGTTGATGTTCGTCTACATACAGATGCTGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAAAGCTCTTCAGTTAAATTATACAGAATTGTTAAGATGCCGCATCAGAGTTGTTTTAGCTCCACAAAAGCATAAGCATACTGCCAATAGAAGCTTCCATGTTAATTCTAGCAACTTGAGTCACTCATTTCAAAGGAGTGAAAGAACTCAGCCTGTGAAAGCTTCAGAGATTTCAGGGGACTGGGAACAAGAAACTGAGTCAAAAATAATTGCTAACTGCAAAGACCTAAGTGCTACTTCAAAGACAATATATGCTTCAAACTTGGCATACAGTATGGAGAAGGATGATATGGAGTTTCTTTTCAAAAATTGTGGAGAAATTGTTGATATCCGCCTACATACAGATCATAACGGGCGGTTTAAAGGCCATGGACATGTTGAGTTTGCAACCACAGAAGCTGCACAAAAAGCTCTTGAATTGAATAATAAAGTATATCTGGGACGTCCTGTTGGAGTTTTTATTGCTAAAGGAAAGGGTGAATATACCTCCAATAGAAGCAACTGGAGCAAGTCATTCCACCAGAGTGAACAAACTAAGCCCATCAAAAGTACAGAGAGTTCAGAGTACTGTGAGGAAGAGGTTGAGGGAAAAGCCTCCAATAGTTATTGGGAAAGTTCTAAAAGGGTAGCTACTCTGAAAGAACAAAATGCTCCACCAAAGACAATATATGTCAGAAACTTGTCATACAGAGTGGAACAGGCTGATATGGAAAATCTTTTCAAAGAATGTGGAAAAATTGTTGATGTTCGTCTACATCGGAATCACAATGGTAGGTTAAATGGCTTTGGACAAGTTGAGTTTGCAACAGCAGAAGCTGCGAAAAAAGCTCTTGAGTTGCATAATACAGAATTGTTGAGACGTCCCATCGGAGTTGATTTGGCTGAAGAAAAAGGTGAATATACCTACAGTAGAAGCAACTGGAGCAACTCATTCCAGAAGTGTGAAAGAGCTCAGTCTCCAACTGTATTTGTGACGGGTTTTGATAGTTCCCTTCCGGCAGAAAAGCTGAAAGCTAGCCTAGAAGAACATTTTGGTTCTTGTGGAGAGATTCAAAGGATATCAATTCCGACATTTCCTGATTCTGGTGCTGTTAAGGGGTTTGCTCACTTGGGGTTCAAGGATGTTGTAAGTGTGAGGAAAGCTCTACATCTTGATCAAAATGAGCTAGGAGGTTTCCCCTTGAGAGTTGAAAAAGCAAAGCCTCgacgtgataactggggtataggcagtggcagagatggacgtgataactggggtataggcagtggcagagatggTGGTGATCATCAGTTTGGTGGAAGGGATGGAAGTGGCTATACCAGCAGAGTGGGTTGGGGGAGAAGTGGTGGTGGTGGGTGGCATTCTCTTCATTTTTCTGATGAAGACTCGGGGAGGAAGAACCACTCTTACTGA 2283 0.4025 MGCQLEINTAERQQLEINTTKKFKHLEIDVAGGFCEVAKKEAKTLVANQTPESGSYHSVPVILICNVKFLMGNKSDPKAGATAVPPLRIGKREGENEDEQQVTAKKQKRDEVAEEQRIMDEIVSDDSFADFEPDKNSEAKKDSLSKQEKKGKPDSANCSSSLESLADGSEEDAGNMDIDEGYNSEECSEGTQEKMQVLPVKSSENSEKGIEEKDSKAPQENPKMLSTPNERNAGSKTIVTRNLSYSVERADLENLFKPCGEVVDVRLHTDAEGRFRGFGHVEFATAEAAQKALQLNYTELLRCRIRVVLAPQKHKHTANRSFHVNSSNLSHSFQRSERTQPVKASEISGDWEQETESKIIANCKDLSATSKTIYASNLAYSMEKDDMEFLFKNCGEIVDIRLHTDHNGRFKGHGHVEFATTEAAQKALELNNKVYLGRPVGVFIAKGKGEYTSNRSNWSKSFHQSEQTKPIKSTESSEYCEEEVEGKASNSYWESSKRVATLKEQNAPPKTIYVRNLSYRVEQADMENLFKECGKIVDVRLHRNHNGRLNGFGQVEFATAEAAKKALELHNTELLRRPIGVDLAEEKGEYTYSRSNWSNSFQKCERAQSPTVFVTGFDSSLPAEKLKASLEEHFGSCGEIQRISIPTFPDSGAVKGFAHLGFKDVVSVRKALHLDQNELGGFPLRVEKAKPRRDNWGIGSGRDGRDNWGIGSGRDGGDHQFGGRDGSGYTSRVGWGRSGGGGWHSLHFSDEDSGRKNHSY 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00031 760 Gene3D - 178 309 IPR012677 -
Gma20g00031 760 MobiDBLite consensus disorder prediction 455 474 - -
Gma20g00031 760 MobiDBLite consensus disorder prediction 188 203 - -
Gma20g00031 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 510 586 IPR000504 GO:0003723
Gma20g00031 760 Gene3D - 455 594 IPR012677 -
Gma20g00031 760 Gene3D - 312 454 IPR012677 -
Gma20g00031 760 MobiDBLite consensus disorder prediction 90 153 - -
Gma20g00031 760 CDD RRM2_NUCLs 611 689 IPR034350 -
Gma20g00031 760 CDD RRM1_NUCLs 511 587 IPR034349 -
Gma20g00031 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 621 684 IPR000504 GO:0003723
Gma20g00031 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 439 IPR000504 GO:0003723
Gma20g00031 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 512 579 IPR000504 GO:0003723
Gma20g00031 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 306 IPR000504 GO:0003723
Gma20g00031 760 SMART rrm1_1 237 308 IPR000504 GO:0003723
Gma20g00031 760 SMART rrm1_1 511 582 IPR000504 GO:0003723
Gma20g00031 760 SMART rrm1_1 372 443 IPR000504 GO:0003723
Gma20g00031 760 SMART rrm1_1 611 687 IPR000504 GO:0003723
Gma20g00031 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 371 447 IPR000504 GO:0003723
Gma20g00031 760 SUPERFAMILY RNA-binding domain, RBD 503 599 IPR035979 GO:0003676
Gma20g00031 760 MobiDBLite consensus disorder prediction 205 219 - -
Gma20g00031 760 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 705 760 - -
Gma20g00031 760 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 126 448 - -
Gma20g00031 760 SUPERFAMILY RNA-binding domain, RBD 368 459 IPR035979 GO:0003676
Gma20g00031 760 SUPERFAMILY RNA-binding domain, RBD 604 718 IPR035979 GO:0003676
Gma20g00031 760 MobiDBLite consensus disorder prediction 76 233 - -
Gma20g00031 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 610 691 IPR000504 GO:0003723
Gma20g00031 760 MobiDBLite consensus disorder prediction 695 725 - -
Gma20g00031 760 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 705 760 - -
Gma20g00031 760 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 126 448 - -
Gma20g00031 760 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 608 704 - -
Gma20g00031 760 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 450 589 - -
Gma20g00031 760 MobiDBLite consensus disorder prediction 455 477 - -
Gma20g00031 760 MobiDBLite consensus disorder prediction 170 186 - -
Gma20g00031 760 Gene3D - 595 734 IPR012677 -
Gma20g00031 760 MobiDBLite consensus disorder prediction 329 348 - -
Gma20g00031 760 MobiDBLite consensus disorder prediction 329 343 - -
Gma20g00031 760 SUPERFAMILY RNA-binding domain, RBD 227 328 IPR035979 GO:0003676
Gma20g00031 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 312 IPR000504 GO:0003723
Gma20g00031 760 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 608 704 - -
Gma20g00031 760 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 450 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00031 Gma-Chr20 385212 429049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00031 228 590 Eukaryotic Initiation Factors Gene Family AT1G34140 24.176 6.23e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00031 - K11294 gmx:100789712 1359.74