Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00026 ATGGCTGGTCAACTCAGTTTGGTAGTGGGGTCCCATGTTTGGATTGAGGACCCTGATTTAGCTTGGATAGATGGAGAAATCCAGGAATCAAACAATGAAGAGATCACGGTTATGTACGAATCAGGCCCGAAGGTTGTGAGCAAATCAGTTAACATGTATCCCAAAGATCCAGAGTTCCCACCTAATGGTGTGGAAGATATGACAAGATTGGCATATTTGCATGAACCAGGAGTACTTCAAAATTTGCATGTTCGATATGCTATGAATGAAATTTATACATACACAGGAAATATATTGATAGCCGTGAACCCTTTTCAAAGGTTACCTCATTTGAGTGCAACTAGTACCATGGCAAAGTATAAAGGTGCGGCTTTTGGTGAGCAGAGCCCACATCCTTTTGCAATTGCAAGTTCTGCATATAGCAAGATGATAAACGAAGAAACAAGCCAATCTATTTTGGTTAGTGGAGAAAGTGGTGCTGGTAAAACTGAAAGTACAAAGATGCTTATGCATTATCTTGCATTTTTGGGAGGGAGAGCAGCAACTGAAGGGAGGTCTGTGGAGCAACAAGTTCTGGAGTCCAATCCTGTTTTAGAAGCATTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAgattcagtttgatcaaaaggggagaatttcaggagctgctatcagaacatatttgctggaacgatctcgtgtctgtcaagtttctgatcctgagagaaattatcattgcttttatatgctttgtgctgcaccacaagagGATGTTGATAAGTATAAATTGGGAAATCCAAGAAAATTTCATTACCTTAATCAATCAAATTGCATTGAGCTTGATGGGTTGGATGATTCTAAGGAGTACCTTGCAACTAAGAGAGCTATGGAGGTTGTTGGGATAAATTCTGATGAGCAGGATGCTATATTTCGAATAGTAGCTGCAGTACTTCATTTAGGAAACATTGAATTTGTTAAGGGAGGGGAAGATGAAACAGATTCCTCTCAGCCCAAGGATGAAAAATCCCATTTCCATCTTAAAATCGCAGCTGAGCTTTTGATGTGTGATGAGAAGTCCCTTGAAGACTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGACACCATAACAAAATCACTTGATCCAAATGCTGCAGCTCTTAGTAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGGACAAGATTAACAACTCTATTGGGCAAGATCCAGATTCAACTAACTTGATTGGGGTTCTAGATATTTATGGATTTGAGAGTTTTAAGACAAACAGCTTTGAACAATTTTGTATCAATTTGACAAATGAGAAATTACAACAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAGATCGATTGGAGTTATATTGAATTCGTTGATAATCAAGATGTTCTTGATCTCATAGAGAAGAAACCCGGTGGCATTATTGCTCTCCTGGATGAGGCCTGCATGTTTCCAAGATCAACACATGAAACATTTGCTGAAAAGCTATATCAAACCTTTAAAGACAATAAACGCTTCAGCAAACCAAAGTTGTCTCGCACTGACTTTACTATTAACCACTATGCCGGTGATGTCACTTATCAAACTGATTTTTTCCTTGATAAAAATAAAGACTACGTTGTTCCAGAACATGCTGCTCTACTCAGCAATTCGAAGTGCCCCTTTGTTTCAGGGCTTTTCCCACCTTTACCCGAGGAAACTACAAAATCAACGAAGTTCTCTTCTATAGCCACTCAGTTTAAGCTTCAACTGCAATCTTTGCTTGAAACACTAAATGCTACCGAGCCACACTACATTCGTTGTGTAAAGCCAAATAATCTTCTGAAGCCTGGAATGTTCGAGAACAATAATGTGTTGCAGCAGCTTCGATGTGGAGGAGTAATGGAGGCAATTCGGATAAGTTGTGCTGGATATCCCACCAGAAAGAACTTTGATGAATTTGTTCAGCGGTTTACTATCCTAGAACCTAATGTTCTAAAAGCATGCCCTGATGAGATGACTGCTTGCAAGAGGCTTCTAGATAGAGCAAACCTTAAAGATTATCAGATTGGAAAGACAAAAGTGTTTCTGAGAGCCGGTCAAATGGCAGAATTAGATGCATGTCGTGCTGAGGTCTTGGGAAGATCTGCAAGCATTATTCAGAGAAAAGTCCGCACATTTATTTGTCGAAAACACTATATTTTATTGCAGTTGTCTGCCATAGAACTTCAAAGGGTTGCTAGAGGACAACTTGCACGACATCAGTATGAATGCATGAGGAGGGAAGCTGCTTCTTTGATAATTCAGAAAAACTTCCGCATGCATATTTCCAGAAATGCTTACAAAACTATTTATGCCCCTGCTATTTATATTCAAACTGGTATGCGAGGGATGGCTGCTAGAAATGACCTTAGATTCAGGAAACGGACGCAAGCTGCAATTGTTATTCAGGGTCACTACAGAGGTTATTCAGCTCGTACTTATTTCAAAAAACTAAAGAAATCAGCAATTGCTGCACAGTGTTCCTGGAGAAGAACATTGGCACGTAGAGAACTTCGAAAGCTTAAAATGGCAGCCAAGGAATCAAAGGCACTTGAAGCAGCTAAAAATAATCTGGAAATACAAGTCAAAGAATTAACTTCGTGTCTAGAAACAGAGAAGAGAATGAGGgaagccaagacacaggaaaatgaaaaactacaacatgcattgcaagagatggaacttcagctccaagaaatcgaggaagccaaaaaacaggaaaatgaaaaactacagcatgctttgcaagagatggagcttcagtttcaagaaaCCAAGGCAGCGCTAATTCAGGAACGAGAGGCTGCCAAGAAAGTAGCTGAGCAAACTCCAACTACACAGGAGAACCCTGTTAATGTTGTTGACAGTGAATTGATCAATAAGCTGACTACAGAAAATGAACAACTCAAGGAACTAGTTAATTCGTTGGAAAAGAAATCTGTACAGGAGTTTCCTGTTAATGTTACTGACAATGAGTTGATCAATAAACTTTCTTCAGAAAATGAACATCTTAAGGAACTACTTAATTCATCGGAAAATAAAACTATACAGGAGTTTCCTGTTAATGTTACTGACAATGAGGTGATCAGTAAGATCACTACAGAAAATGAACATCTTAAGGATCAAGTTAATTCTTTGGAAAGAAAAATTGATGAAGCTGAGAGGAAATATGAAGAATGTAACAGGGTTAGTGAGGAGCGCATGAATCAAATTATAGAGACAGAATCAAAGATGATTGAGACAAAGACAAATATGCAGAGGCTTGAAGAAAAGCTATCTGATATGGAAACTGAGAACCAAGTTTTGCGGCAGCAAGCCTTGTTGAGTTCATCATCCCGGAGAATGTCAGGAAAGCTTGCACCTGCTACAACTCCGGCACTACAGGGTTCTGTTTCTTCAAAAACATTTGGTGCAGAGGATAAAGTAAGGAGATCTATTATGGAGAGGCATCAAGAGAGTGTAGATGCTCTTTTCAAATGTGTGACAAAAGATCTTGGGTTCTCTGAAGGAAAACCTGTTGCAGCATTTACCCTTTACAATTGTCTGCTACATTGGAAATCTTTTGAAGCTGAGAAAACAAGCATATTCGATCGTCTTATACAGCTGATCGGTTCTGAATTAGAGGATCCTGACAACAATGATTGTATGGCTTATTGGCTATCCAACACATCTTCTTTGTTTTTCCATCTTCAGCGATGTCTAAGAGTACCTACAACACGGAAACCACCCACCCCCACTTCGTTTTTTGGGAGGATGACCCAGGGTTTCCGCTCATCTAATAGTCTTTCCAGCAATGCTTTTGATGTAGAGCATCAGGTCGATGCCAAGTATCCTGCCTTGCTTTTCAAGCAACAGCTTGCAGCTTATGTGGAAAAGATATATGGAATCATTCGTGAAAGTTTTAAGAAAGACTTGTCACCTCCACTTTCTTCTTGCACTAAGGCGGACAAAACATCAAATGACAGCAGCCAACCATCTGGTTCTTGGAACAGCATCATCGAATGCCTTAATAGATATCTCAAGATTCTGAAAGAAAACTATGTGCCTCCTGTTCTGGTTCAGAAGCTATTTAGTCAAATTTTTCAATACATCAATATGAAACTCTTCAATAGCCTTCTTTTACATAGAGAATGCTGCACATCCAAAAGTGGAGAACAGATAAGATCAGGGTTGGCTGAACTAGAATTATGGTGTACTGAAGCAACGGAAGAGTATGTTGGCTCTTCTTTCAATGAACTCAAACATGCAAAGCAAGCAGTTAGATTCTTGGTTGCACTAAAAAAGGAAGAGCTATCCTATGATGATCTTACAAATGACCTCTGCCCAGTCCTAAGTGCTCAACAGCTTTATAGAATATGTACACTTTACAGTGATGACGATGATGACAATAAGCAAAGTGTATCAACAGACGTCACTACTAGATTGAAGCTTCTAATGACAGATGATGCAGATGAAGATGACAAATCTTTCTTGTTGGAGGACAACACAAGTCATCCTATTATCGTTGAAGAGATCTCTACTTCTGCTCTAGATAAAACCATTCCAAAAATAAAACCTCCTGCAGAACTTCTGGAGAATGCAAACTTCCAATTTTTACATGATTATTGTTAG 4725 0.3687 MAGQLSLVVGSHVWIEDPDLAWIDGEIQESNNEEITVMYESGPKVVSKSVNMYPKDPEFPPNGVEDMTRLAYLHEPGVLQNLHVRYAMNEIYTYTGNILIAVNPFQRLPHLSATSTMAKYKGAAFGEQSPHPFAIASSAYSKMINEETSQSILVSGESGAGKTESTKMLMHYLAFLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPQEDVDKYKLGNPRKFHYLNQSNCIELDGLDDSKEYLATKRAMEVVGINSDEQDAIFRIVAAVLHLGNIEFVKGGEDETDSSQPKDEKSHFHLKIAAELLMCDEKSLEDSFCKRVMVTRGDTITKSLDPNAAALSRDALAKIVYSRLFDWIVDKINNSIGQDPDSTNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTINHYAGDVTYQTDFFLDKNKDYVVPEHAALLSNSKCPFVSGLFPPLPEETTKSTKFSSIATQFKLQLQSLLETLNATEPHYIRCVKPNNLLKPGMFENNNVLQQLRCGGVMEAIRISCAGYPTRKNFDEFVQRFTILEPNVLKACPDEMTACKRLLDRANLKDYQIGKTKVFLRAGQMAELDACRAEVLGRSASIIQRKVRTFICRKHYILLQLSAIELQRVARGQLARHQYECMRREAASLIIQKNFRMHISRNAYKTIYAPAIYIQTGMRGMAARNDLRFRKRTQAAIVIQGHYRGYSARTYFKKLKKSAIAAQCSWRRTLARRELRKLKMAAKESKALEAAKNNLEIQVKELTSCLETEKRMREAKTQENEKLQHALQEMELQLQEIEEAKKQENEKLQHALQEMELQFQETKAALIQEREAAKKVAEQTPTTQENPVNVVDSELINKLTTENEQLKELVNSLEKKSVQEFPVNVTDNELINKLSSENEHLKELLNSSENKTIQEFPVNVTDNEVISKITTENEHLKDQVNSLERKIDEAERKYEECNRVSEERMNQIIETESKMIETKTNMQRLEEKLSDMETENQVLRQQALLSSSSRRMSGKLAPATTPALQGSVSSKTFGAEDKVRRSIMERHQESVDALFKCVTKDLGFSEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIQLIGSELEDPDNNDCMAYWLSNTSSLFFHLQRCLRVPTTRKPPTPTSFFGRMTQGFRSSNSLSSNAFDVEHQVDAKYPALLFKQQLAAYVEKIYGIIRESFKKDLSPPLSSCTKADKTSNDSSQPSGSWNSIIECLNRYLKILKENYVPPVLVQKLFSQIFQYINMKLFNSLLLHRECCTSKSGEQIRSGLAELELWCTEATEEYVGSSFNELKHAKQAVRFLVALKKEELSYDDLTNDLCPVLSAQQLYRICTLYSDDDDDNKQSVSTDVTTRLKLLMTDDADEDDKSFLLEDNTSHPIIVEEISTSALDKTIPKIKPPAELLENANFQFLHDYC 1574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00026 1574 PANTHER MYOSIN 5 1571 - -
Gma20g00026 1574 Gene3D - 737 786 - -
Gma20g00026 1574 Gene3D - 787 834 - -
Gma20g00026 1574 Gene3D - 835 884 - -
Gma20g00026 1574 Gene3D Kinesin motor domain 65 664 IPR036961 -
Gma20g00026 1574 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00026 1574 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00026 1574 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00026 1574 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00026 1574 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00026 1574 CDD MyosinXI_CBD 1186 1541 IPR037975 GO:0007015
Gma20g00026 1574 ProSiteProfiles IQ motif profile. 833 862 IPR000048 GO:0005515
Gma20g00026 1574 SMART iq_5 736 758 IPR000048 GO:0005515
Gma20g00026 1574 SMART iq_5 855 877 IPR000048 GO:0005515
Gma20g00026 1574 SMART iq_5 832 854 IPR000048 GO:0005515
Gma20g00026 1574 SMART iq_5 759 781 IPR000048 GO:0005515
Gma20g00026 1574 SMART iq_5 784 806 IPR000048 GO:0005515
Gma20g00026 1574 SMART iq_5 807 829 IPR000048 GO:0005515
Gma20g00026 1574 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Gma20g00026 1574 Pfam DIL domain 1394 1497 IPR002710 -
Gma20g00026 1574 Pfam Myosin N-terminal SH3-like domain 10 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gma20g00026 1574 ProSiteProfiles IQ motif profile. 785 811 IPR000048 GO:0005515
Gma20g00026 1574 Coils Coil 997 1017 - -
Gma20g00026 1574 PANTHER MYOSIN HEAVY CHAIN 5 1571 - -
Gma20g00026 1574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 787 IPR027417 -
Gma20g00026 1574 Pfam IQ calmodulin-binding motif 858 877 IPR000048 GO:0005515
Gma20g00026 1574 Pfam IQ calmodulin-binding motif 834 854 IPR000048 GO:0005515
Gma20g00026 1574 Pfam IQ calmodulin-binding motif 787 806 IPR000048 GO:0005515
Gma20g00026 1574 Pfam IQ calmodulin-binding motif 739 757 IPR000048 GO:0005515
Gma20g00026 1574 Pfam IQ calmodulin-binding motif 763 780 IPR000048 GO:0005515
Gma20g00026 1574 Coils Coil 1032 1052 - -
Gma20g00026 1574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 884 IPR027417 -
Gma20g00026 1574 ProSiteProfiles IQ motif profile. 810 837 IPR000048 GO:0005515
Gma20g00026 1574 MobiDBLite consensus disorder prediction 1344 1365 - -
Gma20g00026 1574 Gene3D - 669 732 - -
Gma20g00026 1574 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gma20g00026 1574 Pfam Myosin head (motor domain) 64 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00026 1574 Gene3D Myosin VI head, motor domain, U50 subdomain 312 603 - -
Gma20g00026 1574 ProSiteProfiles Myosin motor domain profile. 62 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00026 1574 Coils Coil 879 973 - -
Gma20g00026 1574 MobiDBLite consensus disorder prediction 1349 1365 - -
Gma20g00026 1574 Gene3D - 441 625 - -
Gma20g00026 1574 Gene3D - 252 310 - -
Gma20g00026 1574 SMART DIL_2 1393 1500 IPR002710 -
Gma20g00026 1574 ProSiteProfiles Dilute domain profile. 1235 1519 IPR002710 -
Gma20g00026 1574 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Gma20g00026 1574 SMART MYSc_2a 56 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00026 1574 Coils Coil 1067 1143 - -
Gma20g00026 1574 CDD MYSc_Myo11 76 722 IPR036018 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00026 Gma-Chr20 283859 303032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00026 1 1571 Myosins gene family AT5G43900 59.988 0.0 1866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00026 K10357 - gmx:100788123 2950.61