Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00021 ATGACTGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCTAACCCAGCTGCTTTTGTCTTAATGAAAGAGAAAAAAGATTTCAAGTTTGAAACAAATGTACAGCCTCTTCGTCTTTCTAAATGGATTGATGAAAAGGATATAATATCCTTTTCTCTGAGAGGCAGAAAATATACATACCATGAATTTGAGGATCTTGCAGACAAGGCTTTTTTCAGTAGATTTCATAGTTCAGGAGGTCTTCCTTCTTCATATGCGGAAAAGGAGTTCTGGCATGAGATGGGCTCTGGAGAAAGGGAAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTAATGACAGACTTGGAACAAGCAAATGGAACTTGAAGAATTTCTCACGGCTGCCACAATCCCTGTTACGTTTAGTCGACAGGGAAATTCCCGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATAAATTATCATCACTCGGGTGCAAATAAAACTTGGTATGGCGTGCCTGGTTATGCAGCCTCTCAATTTGAAAAGACTGTCTTACAACATGTGTACTCTAATAAGATCTTAACAAAACATGGAGACGATGGAGCTTTCAAGTTTCTTGCACAGAAAACAACCATGTTCCCACCAAATGTCATGTTACAACATGATGTGGCAGTTTACAAAGCTGTGCAGAAGCCAGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTAATGGTGATTGGTTTCAACTTGGGGCTGCAGCTAGCAGGCGTTATGCACATCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTATAAAGAGGCAATGCTGGTTTACAAGTCCTCAAGAGTCAGAAGTTACAAGAAGAAGCCTGAAGACACAGCATCTTATCAAGCTATTATGCTGCCTTTCTTGCATCTTATGCAATCTTAA 1041 0.3958 MTGICKIVSPIAASNPAAFVLMKEKKDFKFETNVQPLRLSKWIDEKDIISFSLRGRKYTYHEFEDLADKAFFSRFHSSGGLPSSYAEKEFWHEMGSGERETVEYGVNVEGSAFSCDPNDRLGTSKWNLKNFSRLPQSLLRLVDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPGYAASQFEKTVLQHVYSNKILTKHGDDGAFKFLAQKTTMFPPNVMLQHDVAVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFANGDWFQLGAAASRRYAHLRMMPLIPYEELLYKEAMLVYKSSRVRSYKKKPEDTASYQAIMLPFLHLMQS 346
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00021 346 Gene3D Cupin 1 337 - -
Gma20g00021 346 Pfam JmjC domain, hydroxylase 153 276 IPR003347 -
Gma20g00021 346 ProSiteProfiles JmjC domain profile. 123 293 IPR003347 -
Gma20g00021 346 SMART cupin_9 123 293 IPR003347 -
Gma20g00021 346 SUPERFAMILY Clavaminate synthase-like 126 312 - -
Gma20g00021 346 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 346 - -
Gma20g00021 346 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 3 346 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma20g00021 Gma-Chr20 248402 251013 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00021 120 308 C2H2 Transcription Factor Family AT5G04240 45.503 3.29e-56 195
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma20g00021 JmjC 1.1e-38 CL0029
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00021 - - gmx:100793144 649.818