Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00018 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCACAAGGCAAGTGACCTTCTCCAAAAGAAGAGGTGGCCTCTTGAAGAAGACAAAGGAGCTTTCTGTGCTTTGTGATGCTAAGATTGGGATTATCATCTTCTCCAGCACCGGGAAGATGAGGGAATGGTGCACCGAACCCTTTAGGATGGAGCAGATCATAGAGCAGTACCAGATATCAAAAGGAACTCCCATAGCGGAACGTGGACATGATCATCCCCGAGAAGAATTTTTCCATAATATGGCAATGCTGAGGCAGCAAACTATCCGTCTTGAATTGGAAATTCAACGCTATCTTGGAGAGGACATGAGGGGTTTACAATATGAAGATTTGACTAAACTTGAACAAGAATTGGAGAACTCTGTGGCAAGGATTCGAAACCGTCAAAATGAGCTCTTGCAACAGCAAATGGAGAATCTACGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAATCATTTTTCCAACTGGGAACACCACCAAGCAGTGTTGGAGTTTCAGAAGGCTGCTGCTACAGTGGAAGCAAGCAAACCAATGTATGTGATGGATCACTTCTCATTCTTTGAAGAGCAACCTGCTGGGAGCATCCTTCAACTAGCTTCTCCTATGCTTCCACACTTTCATCCATATCTTCAGCTGGCACAGCCCAATATCCAAGACTCAGTCAGGGGCCAAAGCTATAACAATGGTATAAATTAA 741 0.4426 MGRGKIEIKRIENTTTRQVTFSKRRGGLLKKTKELSVLCDAKIGIIIFSSTGKMREWCTEPFRMEQIIEQYQISKGTPIAERGHDHPREEFFHNMAMLRQQTIRLELEIQRYLGEDMRGLQYEDLTKLEQELENSVARIRNRQNELLQQQMENLRRKERILEEENNHFSNWEHHQAVLEFQKAAATVEASKPMYVMDHFSFFEEQPAGSILQLASPMLPHFHPYLQLAQPNIQDSVRGQSYNNGIN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00018 246 Coils Coil 122 167 - -
Gma20g00018 246 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma20g00018 246 Pfam K-box region 86 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma20g00018 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 219 IPR031050 GO:0005634|GO:0048316
Gma20g00018 246 Gene3D - 14 91 IPR036879 GO:0003677|GO:0046983
Gma20g00018 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma20g00018 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma20g00018 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma20g00018 246 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Gma20g00018 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma20g00018 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma20g00018 246 PANTHER MADS BOX PROTEIN 1 219 - -
Gma20g00018 246 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Gma20g00018 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00018 Gma-Chr20 226266 229382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00018 1 240 MADS-box Gene Family AT5G23260 44.706 1.44e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma20g00018 K-box 2.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00018 - - gmx:100783876 474.167