Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00010 atgtctgcaacatccaaggtcctgcctgctctccaccctatcaaatcatTGCCTCCCAAGTTCAAGATTACTTCTGGTAATCCGACTGCTGGTCTAATGGAAAACCATGGAGATGCTAAGTTCagaagcaatgacgtgatcagatcaggtagtccagaaaatgatgctttgataggggaggttgctgaggaagctcagaactgtgctggtgacatgggtgtttacggtgaggacttggcgtacagcagaaaaggtgtgtcgttagaagacaggccatcaattgctgatgaagacttagaatctgttcctctgcccttcccatcaatttcaatgtcctctagggaacgcaggtggagtgatacaacaccttatgcttcaaagaagAAACTTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGGGAAGATAATAACAACTTCTGGAAATGAATCCATCATTTCACTGTTTGACGGGAAGGTTTTGAAAGTGAAAGAAGAAAGTTTAGTACCAGCAAATCCTGATATCCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAGCCGTCAGTTTTATTCAACCTGCAATATAGATACAATCAAAACATGATTTATACAAAAGCAGGGCCTGTTTTGGTTGCTATAAATCCCTTTAAGAAAGTTCCTCTATATGGTAATGATTATATTGAAGCCTACAAGCGTAAAGCAATTGAAAGCCCTCATGTATAtgcaataacagacacggccatccgagaaatgatacgagTTATCATGTACATGTTCAGTGGGGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGCGGTGGAAGTGGAATAGAGTATGAGATTTTAAAGACTAATCCAATACTAGAAGCCTTTGGCAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATCTCCGGTgctaatattcaaacttgtaagtttatcctctttaatggttggaaccatTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGATCATATCATATATTTTATCAGCTATGTGCTGGTGCACCTCCATCTCTCAGGGGGAAGCTAAACCTACAAAATGCAGAAGACTATAATTATCTGAGGCAGAGCAATTGTTATTCAATTACTGGTGTTAATGATGCAGAAGAATTTCGTACAGTCATGGAAGCTCTTGATGTTGTCCACATTAGTAAAGAAGACCAGGAGAATgtatttgcaatgcttgctgcagtattatggttaggaaacatatcatttactgtgattgataatgaaaatcatgtTCAAGCTGTAGAAGATGAGGGTCTGTTCCATGTAGCTAAATTAATTGGCTGTAGCATTGAAGATCTCAAGTTGACACTATCAACTCGCAAAATGAAAGTTGGTAATGATAATATTGTCCAAAAGTTGATGCTATCACAGGCCATTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCATGCCTGTTTGATTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATAGGAACAGTTTTGAACAGTTCTGCATAAATTATGCAAATGAGAGATTACAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGgaatatattcaagatggcattgactgggctaaagttgaatttgaagacaaccaagACTGCCTTAATCTTTTTGAGAAGAGGCCACTGGGTTTATTATCCTTGTTAGATGAAGAGTCCACTTTCCCAAATGGCACAGATCTAACACTTGCTAACAAGCTTAAACAGCATTTGAATTCTAATTCGTGCTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTACACCATTATGCTGGGCAGGTAACCTATGATACAACTGGATTTCTGGAGAAAAACAGAGACCTATTGCACGTGGATTCCATCCAACTTCTATCCTCATGCACGTGTCCTCTTCCTCAAATATTTGCATCTCATATGCTCACTCAGTCTGATAAGCCGGTAGTTGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAATTGTTTCAACTGATGCAACGACTGGAGAGTACTACTCCACATTTTATTCGCTGCATTAAACCCAATAATCTCCAATCACCTGAATCATATGAGCAAGGGCTTGTATTGCAACAGCTGAGATGCTGTGGGGTCCTGGAAGTAGTTCGAATATCGAGATCAGGCTTTCCAACAAGAATGTCTCACCAAAAATTTGCCAGAAGATATGGTTTTCTCCTTGATAATGTTGCATCTCAGGATCCACTTAGTGTTTCGGTTGCAATTCTTCATCAGTTTAATATTTTGTCGGAGATGTATCAAGTTGGCTACACAAAATTATTTTTCCGGACAGGGCAGATTGGTGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTCCAAAGTTGTTTCAGGGGTTTCCAAGCACGTCGTTCTCTCAAGGATCTTCGGGGAGGAATCACTACTTTGCAGTCATTTATTAGGGGAGACAAAACCAGAAAGGCATATTCAGCTTTACTTAAGAGGCATAGAGCTGCTGTTATTATACAGAAGCAAATCAAAGCAGTATTTGCAAGAAACAGAATGAGGACTATTAGTGATGCTGCAATAGTCATACAAGCAGTTATTCGTGGTTGGTTGGTCAGAAGATGCTCAGGAAATATTGGATTTTTGAAATCTGGAGACATGAAGATGAAAGAGTCTGATGAGGTTCTGGTTAAGTCATCTTTCCTGGCCGAATTACAGTGCCGAGTACTTAAGGCTGAAGCTGCCCTTAGAGAGAAAGAAGAGGAAAATGACATCCTTCATCAACGTCTCCAACAATATGAGAGCAGATGGTCTGAGTATGAACTAAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTACAATCTAGCCTCTCCATTGCAAAGAAGAGCCTTGCTATCGATGACTCTGAAAGAAATTCAGACACATCTGTTAATGCAAGTGATGAGCGGGATTACAGCTGGGATGTGGGAGGCAATCATCGGCGCCAAGAAAGCAATGGGGCAAGATCAACGAGTGCTGGTCTAAGTGTTATAAGTCGGCTGGCTGAAGAATTCGAGCACAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAGGTAGAAGCAAGTTTGAACCCAGATCAAGAGCTTAGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGACTGCGTGAAACAAAAGTTATTATAAATAAACTTGGAAGCGAAGATGGCGCACTTGAGAAAATGAAGAAAAAGTGGTGGGGAAGAAGGAACAGTACAAGGATAAATTGA 3540 0.3435 MSATSKVLPALHPIKSLPPKFKITSGNPTAGLMENHGDAKFRSNDVIRSGSPENDALIGEVAEEAQNCAGDMGVYGEDLAYSRKGVSLEDRPSIADEDLESVPLPFPSISMSSRERRWSDTTPYASKKKLQSWFQLPNGNWELGKIITTSGNESIISLFDGKVLKVKEESLVPANPDILDGVDDLMQLSYLNEPSVLFNLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNDYIEAYKRKAIESPHVYAITDTAIREMIRVIMYMFSGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKFILFNGWNHSRVVQCNEGERSYHIFYQLCAGAPPSLRGKLNLQNAEDYNYLRQSNCYSITGVNDAEEFRTVMEALDVVHISKEDQENVFAMLAAVLWLGNISFTVIDNENHVQAVEDEGLFHVAKLIGCSIEDLKLTLSTRKMKVGNDNIVQKLMLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTLANKLKQHLNSNSCFKGERDQAFTVHHYAGQVTYDTTGFLEKNRDLLHVDSIQLLSSCTCPLPQIFASHMLTQSDKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLDNVASQDPLSVSVAILHQFNILSEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGFQARRSLKDLRGGITTLQSFIRGDKTRKAYSALLKRHRAAVIIQKQIKAVFARNRMRTISDAAIVIQAVIRGWLVRRCSGNIGFLKSGDMKMKESDEVLVKSSFLAELQCRVLKAEAALREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDTSVNASDERDYSWDVGGNHRRQESNGARSTSAGLSVISRLAEEFEHRSQVFGDDAKFLVEVKSGQVEASLNPDQELRRLKQMFEAWKKDYGARLRETKVIINKLGSEDGALEKMKKKWWGRRNSTRIN 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00010 1179 MobiDBLite consensus disorder prediction 1045 1083 - -
Gma20g00010 1179 Gene3D Kinesin motor domain 179 788 IPR036961 -
Gma20g00010 1179 Pfam Myosin head (motor domain) 182 842 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00010 1179 PRINTS Myosin heavy chain signature 594 622 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00010 1179 PRINTS Myosin heavy chain signature 261 286 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00010 1179 PRINTS Myosin heavy chain signature 541 569 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00010 1179 PRINTS Myosin heavy chain signature 210 229 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00010 1179 PRINTS Myosin heavy chain signature 303 330 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00010 1179 SMART MYSc_2a 174 855 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00010 1179 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 1179 - -
Gma20g00010 1179 CDD MYSc_Myo8 194 842 IPR036022 -
Gma20g00010 1179 Gene3D - 858 906 - -
Gma20g00010 1179 Gene3D - 907 949 - -
Gma20g00010 1179 PANTHER MYOSIN 9 1179 - -
Gma20g00010 1179 Pfam IQ calmodulin-binding motif 930 946 IPR000048 GO:0005515
Gma20g00010 1179 Pfam IQ calmodulin-binding motif 860 877 IPR000048 GO:0005515
Gma20g00010 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 901 IPR027417 -
Gma20g00010 1179 ProSiteProfiles IQ motif profile. 858 885 IPR000048 GO:0005515
Gma20g00010 1179 SMART iq_5 878 900 IPR000048 GO:0005515
Gma20g00010 1179 SMART iq_5 855 877 IPR000048 GO:0005515
Gma20g00010 1179 SMART iq_5 904 926 IPR000048 GO:0005515
Gma20g00010 1179 SMART iq_5 927 949 IPR000048 GO:0005515
Gma20g00010 1179 ProSiteProfiles IQ motif profile. 928 957 IPR000048 GO:0005515
Gma20g00010 1179 Gene3D - 553 745 - -
Gma20g00010 1179 ProSiteProfiles IQ motif profile. 879 908 IPR000048 GO:0005515
Gma20g00010 1179 MobiDBLite consensus disorder prediction 1069 1083 - -
Gma20g00010 1179 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 127 176 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gma20g00010 1179 Coils Coil 974 1022 - -
Gma20g00010 1179 Gene3D - 365 421 - -
Gma20g00010 1179 Gene3D Myosin VI head, motor domain, U50 subdomain 422 530 - -
Gma20g00010 1179 ProSiteProfiles Myosin motor domain profile. 180 854 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g00010 1179 Gene3D - 789 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00010 Gma-Chr20 131254 147985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00010 6 1177 Myosins gene family AT1G50360 73.430 0.0 1744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00010 - K10357 gmx:100781736 2279.6