Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02470 ATGGCTACTGAACATGAAGACGATTTCAAGGATGAGAAGAATCCCCGCCCCCTCGACGAGGATGACATCGCCCTTCTCAAAACCTATGGTTTGGGGCCTTATTCCACAAGCATAAAAAAAGTCGAGAAGGAAATCAAAGACATGGCAAAAAAGGTCAATGATTTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGGTAGCAAGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATGTTATCAATGTGAAGCAGATTGCAAAGTTTGTCGTTGGGCTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGACCCTAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAACAGATTGAAAAAATGCGAGAAGTTGTTGAGCTTCCCATGCTCCACCCAGAGAAATTCGTTAAGCTAGGAATTGATCCTCCAAAGGGTGTTCTTTGCTATGGTCCACCAGGGACTGGCAAAACACTTTTAGCTAGGGCTGTGGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCAATTGGGGGTGCACGGTTTGATGATGGTGTTGGCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGCATATGGTGTAGTATGCTTTCTGCCGAAAACTTGTTCCTATTTTGAGGGATTTCTGCCATTCCCTTTCTTCCCTATGACCCACGATTGA 1212 0.4332 MATEHEDDFKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTAYGVVCFLPKTCSYFEGFLPFPFFPMTHD 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02470 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 373 IPR027417 -
Gma19g02470 403 SMART AAA_5 201 340 IPR003593 -
Gma19g02470 403 Pfam ATPase family associated with various cellular activities (AAA) 205 337 IPR003959 GO:0005524|GO:0016887
Gma19g02470 403 ProSitePatterns AAA-protein family signature. 308 326 IPR003960 GO:0005524|GO:0016887
Gma19g02470 403 Gene3D - 158 337 IPR027417 -
Gma19g02470 403 Gene3D - 339 376 - -
Gma19g02470 403 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 6 377 - -
Gma19g02470 403 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 6 377 - -
Gma19g02470 403 Gene3D - 32 157 IPR012340 -
Gma19g02470 403 CDD AAA 171 338 - -
Gma19g02470 403 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 98 370 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02470 Gma-Chr19 53114360 53118552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02470 149 378 Calmodulin-binding Proteins AT3G56690 41.810 3.61e-51 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02470 K03061 - gmx:100808239 753.821