Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02466 ATGGAGTTGATGCAACAAGTTAAAGGTAACTATTCTGATAGCAGGGAGGAAGAGGAGGCTGCAGCAGAGATTATCACAATCACAAGGGAACCAGAAAGCAGCAGGTTACACCAACAAGATGCAGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGACTTGTCACTAGGGAGCAGCAAGGAAGAGGAAGAAGGGAAGTTGCAACAAGGAGGTGGAGGTGGAGGAGTGGTTCATCATGCTCATGAAATAGTGGAGAAAGAGAATATGTTTGAGAAAGTGGTGACACCGAGCGACGTAGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGACTCCTCATCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGGTATTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACTAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCCGGTGACATTGTCTCCTTCCAGCGTGGCCTTGGGGATTTGTATAGACATAGATTGTACATAGATTGGAGGAAAAGGTCTGCTCATCCTCATGCTCATCATCATGCCCCTGATCCTTTGTTTCTTCCCTCTATCAGATGGTACTCTCTCCCTCCCACCATGCCACCTCGCTACCACCACGATCATCACTTTCACCACCATCTCAATTACAACAATCTCTTCACTTTCCAGCAACACCAGTACCAGCTTGGTGCTGCCACAGCCGCTGCCACTGCTGCTCATCATGGTGACCAGAATTCGGGATCTGGGTCACTCTATTACCTAAGGTCCTCCATGTCAATGGGTGGCGGTGATCAAAACTTGCAAGGACGAGGGAACAACATTGTCCCCATGATCATTGATTCTGTGCCGGTTAGCGTTGGCCATCACAACAATCGCCATGGGAATGGGGGCATCACGAGTGGTGGTGCTACTAGTAGTGGAAAAAGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCGGCAGAAGATTCCAAAGGCTTGTCCTCGGGTTCGGCAGCACATGTGACGACAGCTGCTTCTTCTTCTCTTCATCAGCGCTTGAGGTTGCCACTGCCACATGAAGACCCACTTTCGTCGTCGTCAGCGAGGTTTGGGGATCACAAAGGGGGCAGTACTGGGACTTCGCTGCTGTTTGATTTGGATCCCTCTTTGCAGTATCATCGGCAGTGA 1242 0.504 MELMQQVKGNYSDSREEEEAAAEIITITREPESSRLHQQDAASNFGKKLDLMDLSLGSSKEEEEGKLQQGGGGGGVVHHAHEIVEKENMFEKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLYRHRLYIDWRKRSAHPHAHHHAPDPLFLPSIRWYSLPPTMPPRYHHDHHFHHHLNYNNLFTFQQHQYQLGAATAAATAAHHGDQNSGSGSLYYLRSSMSMGGGDQNLQGRGNNIVPMIIDSVPVSVGHHNNRHGNGGITSGGATSSGKRLRLFGVNMECASSAEDSKGLSSGSAAHVTTAASSSLHQRLRLPLPHEDPLSSSSARFGDHKGGSTGTSLLFDLDPSLQYHRQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02466 413 SUPERFAMILY DNA-binding pseudobarrel domain 88 178 IPR015300 -
Gma19g02466 413 MobiDBLite consensus disorder prediction 362 413 - -
Gma19g02466 413 ProSiteProfiles B3 DNA-binding domain profile. 90 195 IPR003340 GO:0003677
Gma19g02466 413 MobiDBLite consensus disorder prediction 1 21 - -
Gma19g02466 413 Gene3D - 83 205 IPR015300 -
Gma19g02466 413 SMART B3_2 90 195 IPR003340 GO:0003677
Gma19g02466 413 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 44 364 - -
Gma19g02466 413 CDD B3_DNA 89 177 IPR003340 GO:0003677
Gma19g02466 413 Pfam B3 DNA binding domain 90 194 IPR003340 GO:0003677
Gma19g02466 413 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 364 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02466 Gma-Chr19 53063442 53065842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02466 51 344 RAV Transcription Factor Family AT2G46870 50.000 8.07e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma19g02466 B3 3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02466 - - gmx:100812161 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02466 19 53063442 53065842 Gma19g02466 19 53063442 53065842 ECH