Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02455 ATGGGTGAAGTGCCGGCTGTGATGCAGGCGACGCAGGGGGAACAGAGCAACAATGCCTCCGCTGTTCATTGGGAGCGCTTTCTGCCTCGGATGGTGCTTCGGGTCTTGCTTGTCGAAGCTGATGATTCTACTCGACAGATCATTGCTGCACTTCTCCGTAAATGCGGTTACAAAGTGATGTCTTCTCATGATTCAGTAAGCATGGTGTTTAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTATGGAGAAGGCACGCCATAAGCAGGCCTCCTCAAAATTTAACACTGCCGGAGATTGAACTTGGTTTTGCTGCAGAAAACCATGCTGCAAGCAATGACTCTAGTGGTTCTGTGGCTTCTACACCAAAAGATGATGAATGCAGTGAGAAAACAAGTGAGGCTCATAGCACTTGCCCATCGCCATTTTTGGAAGCTGAGAGTACCTACATGGAAAATATGCAGGATATATTGCAGCTGAAGAGCTCTTCAAATTTGAGCAATATTGACACAGTGAAGCATGAAAACTCTACCAAATGTGAAAGGGAGTCAGATAAGCATAATGATGAAGCTGGAGAGAAATCACTGTTTATATTGGAAGATGCAAGGTGCAACAAAACTTTTAAACCAACAGGTTTAAGGCTAGGTCAAAGCTATGAGTGCCATGAAACGAGAAATCAAGATGAAGTTCTAAGAATAGAGTTGATAAAATCCAATCCTGAAATTAATACAGATATTCATAGATGCAGTGATGAACTGGTAGATCCTTCTACTGGCGCCATTGACTTGATTGCTACATTCAAGAATCTTCCAAAGAGCACTGATGAAAAATGTAGTTTCAGTAGTGGTAACACTGCCAAGTTTGATTTTGATACACAATTGGAACTTTCTTTAAGAAGAGATTTTCCTGGAAGCTCATGTAAAGCTGCATTCAAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATAGTAATAGTAAGTTGTTGCAGCCCCTTTTTCCAACACCATCAACTATCTCTGCTAAATTAACCAATGCCAGTCAGAATTCTCATGAATCCCTTAAATTATCAAAAAATACATCTACTTCTCATCAATATAGTGAAAAAAGTCAAAATCAGGAGGAGAAAATCATCACTTCAGTCATTGGTCAGTCTGGACAAGTTGATCCAAAATTACCAAACAGTCAACTTGGATTGTTTCCTGCTACAGGGGTTACTTCTGATCACAAGTCTAAAGGAAATGGAAATGTCTTCCCTTCTAAGCTTTATGCAAAATCAGGTGTCCATCCCATATCGACTCCAAAATCAGTGTGCCAGAAAGAGAGTTCTCCATTTCCCACAAGCACTTCCTCCCAGTCCAATCCTCAAAGTCACAACTCAGAACGTCATCACTGGTTGGAAGATGCAACCCATGCTTCTGATCAAAATGTAAATGATCAAAGCAATTTGGAATGTGAGACACATGACTCTCCTGCTGCTAGTCAGAGTGCTGGTCCTAGTTTTTTCCATGACACAGCAAATCATAATAGTAGTGGTGTATACAGAAGTGATGGAAATGCTACTTCAGCTAAGGTAGCCAAGGAGAGCCATGAAATTTTTATTGATAGTGGTCAACGCAGTTATGATGGATTCATAGGGACAGATTCTCATCGCACTAGCCAACGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGGTGCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGCGTGAAAGGGCAATTTGTTCGCCAAGTACACGATGATCATCCAGTAGCAGATGTGGGTGGTGGTTCCTGA 1896 0.4172 MGEVPAVMQATQGEQSNNASAVHWERFLPRMVLRVLLVEADDSTRQIIAALLRKCGYKVMSSHDSVSMVFKCMLKGAADFLIKPVRKNELRNLWQHVWRRHAISRPPQNLTLPEIELGFAAENHAASNDSSGSVASTPKDDECSEKTSEAHSTCPSPFLEAESTYMENMQDILQLKSSSNLSNIDTVKHENSTKCERESDKHNDEAGEKSLFILEDARCNKTFKPTGLRLGQSYECHETRNQDEVLRIELIKSNPEINTDIHRCSDELVDPSTGAIDLIATFKNLPKSTDEKCSFSSGNTAKFDFDTQLELSLRRDFPGSSCKAAFKERQILNHSNASAFSRYSNSKLLQPLFPTPSTISAKLTNASQNSHESLKLSKNTSTSHQYSEKSQNQEEKIITSVIGQSGQVDPKLPNSQLGLFPATGVTSDHKSKGNGNVFPSKLYAKSGVHPISTPKSVCQKESSPFPTSTSSQSNPQSHNSERHHWLEDATHASDQNVNDQSNLECETHDSPAASQSAGPSFFHDTANHNSSGVYRSDGNATSAKVAKESHEIFIDSGQRSYDGFIGTDSHRTSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHDDHPVADVGGGS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02455 631 Pfam CCT motif 575 617 IPR010402 GO:0005515
Gma19g02455 631 PANTHER PRR RESPONSE REGULATOR 59 175 - -
Gma19g02455 631 PANTHER PRR RESPONSE REGULATOR 22 59 - -
Gma19g02455 631 PANTHER PRR RESPONSE REGULATOR 179 615 - -
Gma19g02455 631 MobiDBLite consensus disorder prediction 369 394 - -
Gma19g02455 631 MobiDBLite consensus disorder prediction 126 156 - -
Gma19g02455 631 SUPERFAMILY CheY-like 33 109 IPR011006 -
Gma19g02455 631 ProSiteProfiles CCT domain profile. 575 617 IPR010402 GO:0005515
Gma19g02455 631 MobiDBLite consensus disorder prediction 453 479 - -
Gma19g02455 631 MobiDBLite consensus disorder prediction 496 537 - -
Gma19g02455 631 MobiDBLite consensus disorder prediction 453 481 - -
Gma19g02455 631 PANTHER TWO-COMPONENT RESPONSE REGULATOR 59 175 IPR045279 GO:0009736
Gma19g02455 631 PANTHER TWO-COMPONENT RESPONSE REGULATOR 179 615 IPR045279 GO:0009736
Gma19g02455 631 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 59 IPR045279 GO:0009736
Gma19g02455 631 Gene3D - 59 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02455 Gma-Chr19 52968678 52973760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02455 574 619 Response Regulator Gene Family AT5G24470 89.130 1.73e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma19g02455 CCT 5.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02455 K12130 - gmx:100809490 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02455 19 52968678 52973760 Gma19g02455 19 52968678 52973760 ECH
Gma19g02455 19 52968678 52973760 Gma16g00158 16 1620919 1625607 ECH