Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02452 ATGGCATTGGCAGCTAATGCTACTCCCTCTCTGGCCTTCGCTTCTTCCTCCTTACTGAACCACAATCCCCAATTTGGTGCTGCTCCCAAACGATTCGTTTCTTCTTCTTCTTCTTCTTTGTGCCTTGCCGCGGGGCTCAGCTCCAAGGCTAGGGCCTTCAGTTTCTCTGCCTCGGCTGCGGCCCTTGACGGAGAAGAACTCGCGGTGGAAGAAACGTGGAAGCTAGCGAGACCAACCGAAGTGTACGTCTGCAACCTTCCACGAAGCTGTGACACGGAGCAACTACTTCATATGTTCAACCCTCACGGAACCGTTCTCTCTGCCCAGGTTTGCCGGAGTGCGGAAACTGGTGAAAGTAGAGGGAGTGCTTATGTCACAATGGCTTCTATTAACTCGGCAAGAAAAGCAATTGCGGCATTGGATGCATCGGATTTTGGTGGGCGTGAAGTGCGGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGAAGGAATCTTGAAACAATGAACTCATCACCCAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGCAATCTTTCCAGGAGTGCGGGGCCTCAAGACTTGAAACAACTTTTTGGTAGATTTGGTATTGTAGCTAGTGTAAGGGTGTTGCAAGATTTGAGGAAAGGGAATCGCAGGGTCTATGCGTTTGTCTCTTATCATTCAGAGTCAGAACGTGATGCAGCAATGTCGCTCAATGGAACAGAATTTTTTGGTCGTGTGCTAGTGATTAGAGAGGGTGTAGAGAGAGAGGACTGA 789 0.4842 MALAANATPSLAFASSSLLNHNPQFGAAPKRFVSSSSSSLCLAAGLSSKARAFSFSASAAALDGEELAVEETWKLARPTEVYVCNLPRSCDTEQLLHMFNPHGTVLSAQVCRSAETGESRGSAYVTMASINSARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRVLVIREGVERED 262
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02452 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Gma19g02452 262 SUPERFAMILY RNA-binding domain, RBD 78 169 IPR035979 GO:0003676
Gma19g02452 262 SMART rrm1_1 183 255 IPR000504 GO:0003723
Gma19g02452 262 SMART rrm1_1 80 153 IPR000504 GO:0003723
Gma19g02452 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 252 IPR000504 GO:0003723
Gma19g02452 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 151 IPR000504 GO:0003723
Gma19g02452 262 Gene3D - 170 262 IPR012677 -
Gma19g02452 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Gma19g02452 262 Gene3D - 56 169 IPR012677 -
Gma19g02452 262 SUPERFAMILY RNA-binding domain, RBD 180 260 IPR035979 GO:0003676
Gma19g02452 262 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 68 262 - -
Gma19g02452 262 PANTHER OS02G0815200 PROTEIN 68 262 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma19g02452 Gma-Chr19 52963230 52964791 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02452 70 262 Eukaryotic Initiation Factors Gene Family AT1G22760 27.411 2.57e-15 73.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02452 - - gsj:114400287 479.944
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02452 19 52963230 52964791 Gma19g02452 19 52963230 52964791 ECH