Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02449 ATGTCGCTCGGAGAAACTGCTTGTTCATACGCAGCTCTCATCCTTCATGAAGATGGAATCAGTGTAACTGCCGACAAGATCAGCACCTTGTTGGAAACTGCAAAGGTTCAAGTAGATACCTATTGGCCAACCTTATTTGCTAAACTTGCTGAGAAGAAAAATCTTGGCGATTTGATAGCCAATGCAGCAGGCGGTGGTGCACCAgttgctgttgcagctgcccctgttgctgcctcaggtggtggtggtgctgctgctgccgccccagctgctgaggaGAAAAAGAAGGAGGAACCTGAAGAAGAGAGTGATGATGATATGGGATTTGGCTTGTTCGATTAG 342 0.348 MSLGETACSYAALILHEDGISVTADKISTLLETAKVQVDTYWPTLFAKLAEKKNLGDLIANAAGGGAPVAVAAAPVAASGGGGAAAAAPAAEEKKKEEPEEESDDDMGFGLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02449 113 MobiDBLite consensus disorder prediction 79 113 - -
Gma19g02449 113 MobiDBLite consensus disorder prediction 98 113 - -
Gma19g02449 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 106 - -
Gma19g02449 113 Hamap 50S ribosomal protein L12 [rpl12]. 6 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Gma19g02449 113 CDD Ribosomal_P1 5 112 - -
Gma19g02449 113 Pfam 60s Acidic ribosomal protein 22 112 - -
Gma19g02449 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 106 - -
Gma19g02449 113 Gene3D - 1 62 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02449 Gma-Chr19 52946145 52947138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02449 1 113 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 51.724 1.24e-35 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02449 K02942 - gmx:100305677 147.902