Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02438 ATGCAATTGGAAATTTCACTCATGATAGGAACTCCCATGCCAAGCAAAAATAAAAGAAGGTTGAATGATGAACAAATCAAATCATTAGAATCCATATTTGAAGCAGACGCAAGACTTGAACCCACAAAGAAATTGCAGTTGGCAAGAGAGCTTGGGTTGCAACCAAGACAGGTTGCCATATGGTTCCAAAACAAGAGGGCTCGATGGAAGTCAAAGCGGCTTCAACGAGACTACACCATACTTCGAGCCAGCTATAACAATTTGATGCTCTGA 273 0.4139 MQLEISLMIGTPMPSKNKRRLNDEQIKSLESIFEADARLEPTKKLQLARELGLQPRQVAIWFQNKRARWKSKRLQRDYTILRASYNNLML 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02438 90 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 89 IPR045224 GO:0003700
Gma19g02438 90 PRINTS Lambda-repressor HTH signature 43 52 IPR000047 GO:0003677
Gma19g02438 90 PRINTS Lambda-repressor HTH signature 52 68 IPR000047 GO:0003677
Gma19g02438 90 ProSitePatterns 'Homeobox' domain signature. 47 70 IPR017970 GO:0000981|GO:0006355
Gma19g02438 90 CDD homeodomain 16 73 IPR001356 GO:0003677
Gma19g02438 90 Gene3D - 11 79 - -
Gma19g02438 90 ProSiteProfiles 'Homeobox' domain profile. 12 72 IPR001356 GO:0003677
Gma19g02438 90 SUPERFAMILY Homeodomain-like 10 72 IPR009057 -
Gma19g02438 90 Pfam Homeodomain 16 70 IPR001356 GO:0003677
Gma19g02438 90 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 15 89 - -
Gma19g02438 90 SMART HOX_1 14 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02438 Gma-Chr19 52859210 52859482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02438 17 88 Homeobox Transcription Factor Family AT2G46680 75.000 1.74e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gma19g02438 Homeodomain 8.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02438 K09338 - gmx:100806279 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02438 19 52859210 52859482 Gma19g02438 19 52859210 52859482 ECH
Gma19g02438 19 52859210 52859482 Gma16g00188 16 1972038 1972987 ECH