Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02425 ATGGGAAGAGCTCCTTGTTGCTCTAAAGTAGGGTTGCATAGAGGTCCATGGACTCCTCGAGAAGATGCATTGCTCACTAAGTATATTCAAACTCATGGAGAAGGCCAGTGGAGATCACTACCAAAAAGAGCCGGGCTTCTTAGATGCGGAAAAAGTTGCCGACTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAACCCCAGAAGAAGATGATCTTATAGTTAGAATGCATTCGCTTTTAGGAAATAGATGGTCCCTCATCGCGGGGAGATTACCAGGACGAACAGATAATGAGATTAAGAACTACTGGAATACCCATCTCAGCAAGAAGCTGAGAAATCAAGGAACCGATCCAAAGACACACGACAAGTTAACTGAGGCACCAGAGAAGAAGAAGGGTAAAAAGAAGAATAAGCAAAAGAATGAGAATAACAAAGGGTCAGAGAAGACTTTAGTTTATCTACCAAAACCCATAAGGGTTAAGGCTTTATCATCATGTATACCCAGAACGGATAGCACCTTAACCCTTAATTCCAATTCAGCAACTGCATCAACTAGCGAAGAGAAAGTTCAAAGCCCAGAAGCAGAAGTAAAAGAGGTGAACATGGTTTGGGGGGTAGGTGACGATGCAGACAATGGTGGGATTGAAATATTCTTTGGTGAAGACCATGACCTAGTCAACAATACTGCCTCTTACGAGGAATGCTATTCTGATGTTCACACTGATGATCATGGTACGCTAGAAAAACTCTACGAAGAGTACTTGCAGCTCTTGAATGTTGAGGAGAAGCCAGATGAATTAGATTCTTTTGCTCAATCTTTATTGGTGTAA 846 0.4184 MGRAPCCSKVGLHRGPWTPREDALLTKYIQTHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIVRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPKTHDKLTEAPEKKKGKKKNKQKNENNKGSEKTLVYLPKPIRVKALSSCIPRTDSTLTLNSNSATASTSEEKVQSPEAEVKEVNMVWGVGDDADNGGIEIFFGEDHDLVNNTASYEECYSDVHTDDHGTLEKLYEEYLQLLNVEEKPDELDSFAQSLLV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02425 281 CDD SANT 16 61 IPR001005 -
Gma19g02425 281 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma19g02425 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma19g02425 281 SMART sant 66 114 IPR001005 -
Gma19g02425 281 SMART sant 13 63 IPR001005 -
Gma19g02425 281 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 267 - -
Gma19g02425 281 Gene3D - 71 155 - -
Gma19g02425 281 MobiDBLite consensus disorder prediction 117 137 - -
Gma19g02425 281 MobiDBLite consensus disorder prediction 115 156 - -
Gma19g02425 281 CDD SANT 71 112 IPR001005 -
Gma19g02425 281 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma19g02425 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma19g02425 281 PANTHER MYB TRANSCRIPTION FACTOR 1 267 - -
Gma19g02425 281 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma19g02425 281 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma19g02425 281 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma19g02425 281 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02425 Gma-Chr19 52735398 52737858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02425 4 129 MYB Transcription Factor Family AT3G13540 73.810 1.51e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g02425 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02425 K09422 - gmx:778044 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02425 19 52735398 52737858 Gma19g02425 19 52735398 52737858 ECH
Gma19g02425 19 52735398 52737858 Gma03g02379 03 48911959 48914561 GST
Gma19g02425 19 52735398 52737858 Gma07g00507 07 4790034 4791640 PCT
Gma19g02425 19 52735398 52737858 Gma16g00203 16 2184881 2186262 PCT
Gma07g00507 07 4790034 4791640 Gma19g02425 19 52735398 52737858 PCT
Gma16g00203 16 2184881 2186262 Gma19g02425 19 52735398 52737858 PCT