Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02424 ATGGGTTTCCATTGTGAGGAAAAGGATAGCATACATCTGCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAAGTGCGTACTTGCTCCATATTTCCCAACCAATGAGGTTGATAAATTTGCTGGAGTGCATAGAGTGTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTCGAGGAAACAAAGAGAGAGGATGCTGTTAAAGCGATGGTGTACGAGGCGACGGCAAGGCTCAGAGACCCAGTTTATGGCAGTGCTGGAGCTATTTATCAGTTACAAAAGATGATTGAGGAACTGAAGGCACAGCTGGAGTCCATAAAAACTCGTGTGTCAGAACAAAAAGACCAGTTGTTGAGTATTCGTAATAACAACGTTAACGCTTGTGGCCACCTTGATCAATATCCATTTCCCGTCAATGTCGACCCCATCTTTGATCATGATCATCTCATGGTCTCAGATCCATTTGATTTTCCTGTAGAAGGTGGTGGCTGGGTATTTAGCAATATGTCAACGCCCTCCTTATAA 540 0.4444 MGFHCEEKDSIHLQPCAACRMLRRRCDSKCVLAPYFPTNEVDKFAGVHRVFGASNVIKMIQMVEETKREDAVKAMVYEATARLRDPVYGSAGAIYQLQKMIEELKAQLESIKTRVSEQKDQLLSIRNNNVNACGHLDQYPFPVNVDPIFDHDHLMVSDPFDFPVEGGGWVFSNMSTPSL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02424 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 8 158 - -
Gma19g02424 179 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Gma19g02424 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 158 - -
Gma19g02424 179 Coils Coil 94 128 - -
Gma19g02424 179 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02424 Gma-Chr19 52723523 52724494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02424 11 115 AS2 family AT2G28500 62.857 9.50e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma19g02424 LOB 2e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02424 19 52723523 52724494 Gma19g02424 19 52723523 52724494 ECH