Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02419 ATGGACCATCAACCTCCACCGTACCCCGCCGCCGCCTCCGCCGCAACGGACAACCCTCGGGGAGGCACGCGCCACCCCGTGTACCGCGGCGTCCGCAAGCGCCGGTGGGGCAAATGGGTCTCCGAAATCCGGGAGCCACGGAAGAAGAACCGCATATGGTTGGGGTCGTTTCCGGTGCCGGAGATGGCGGCGCGAGCATACGACGTCGCAGCCTACTGCCTCAAAGGCCGGAAGGCGCATCTCAACTTTCCCGACGAGGTTGACTCCCTGCCGCTTCCGTCGTCCCGCTCGGCCCGAGATATTCAGGCCGCCGCAGCCCAGGCGGCGCGTATGATGAAAGCCTCCGGCAACGATGAGAAAAGCGGCATTGCCTCCGACGACGGCGATAGCTGCGGGGACGATTTTTGGGGCGAGATTGAATTGCCGGAGCTTATGGATGGCGAGTGCTGCTGGGGTTGTCCGGCCGGCGCTTCATCCTGGACTTCCTCCGGCGACCTCGCCGAGTGGCCGGAGGAGGAGCTTTCGCCGCAGCAACCGTTGTTTATGGCATGTCTATAA 558 0.6434 MDHQPPPYPAAASAATDNPRGGTRHPVYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAHLNFPDEVDSLPLPSSRSARDIQAAAAQAARMMKASGNDEKSGIASDDGDSCGDDFWGEIELPELMDGECCWGCPAGASSWTSSGDLAEWPEEELSPQQPLFMACL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02419 185 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Gma19g02419 185 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Gma19g02419 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 9 175 - -
Gma19g02419 185 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Gma19g02419 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 175 - -
Gma19g02419 185 MobiDBLite consensus disorder prediction 1 27 - -
Gma19g02419 185 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Gma19g02419 185 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Gma19g02419 185 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Gma19g02419 185 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Gma19g02419 185 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02419 Gma-Chr19 52682584 52683273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02419 9 185 AP2-EREBP Transcription Factor Family AT1G01250 53.927 1.17e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma19g02419 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02419 K09286 - gmx:100802036 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02419 19 52682584 52683273 Gma19g02419 19 52682584 52683273 ECH
Gma19g02419 19 52682584 52683273 Gma03g02375 03 48872285 48872839 GST
Gma19g02419 19 52682584 52683273 Gma07g00514 07 4918365 4919238 PCT
Gma19g02419 19 52682584 52683273 Gma16g00213 16 2307728 2308635 PCT
Gma07g00514 07 4918365 4919238 Gma19g02419 19 52682584 52683273 PCT
Gma16g00213 16 2307728 2308635 Gma19g02419 19 52682584 52683273 PCT