Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02418 atgaagcttgacgcgggcgtggtgtgggacgatgaggacaaggccatgcttggggctgttctgggtggtcgagctttggagtttctaatggcaaactggttgtcgaatgagagtgttttaatggcggttgggagtgaggaggggctgcagaacaagctctcggatctggtggagcgtcccaatgtctccaatttcagttggaactactccattttctggcagctctcgcattccaaatccggtgactgggttctgggttggggagacgggtgctgcagggaacccagcgaggaagaagagggttctttgggaagaggaacactgaggcttcttcgcgtggacgaggagatgcagcagaggatgcggaagagggtgctgcagaagctgcacaccacgttcgggggcgaggatgaggacaATTACGCTTTTGGCCTCGACCACGTCACCGACACCGAGATGTTCTTTCTTGCTTCCATGTACTTTTCTTTCCCTCGCGGCCATGGTGGCCCAGGTAAGTGCTTCGCGTCCGGGAAGCATTTGTGGCTCAAATCTGTGTCTGATTACTGCGTGCGTTCTTCCTTGGCTAGCTCTGCGGGAATTCAGACTATTGTTTTGGTCCCTACTGATATGGGAGTGGTGGAGTTGGGTTCTGTCAGAATGTTACCCGAGAGTTTTGAACTCTTGCAGGCTGTTAAATCTGTGTTCTCCACGCAGTCTCCTTCATACCAAGGGGTGAGTGTGAGCACCGGTGGGAATGCTGTTTTCCCTGGTTTGGCAATTGGGGATGCTAATAAGGTAGATGGAGGAGTTTCGATTCCCAAGGTTTTTGTCAACACAATTGGAAATCGGACGCATTTCAGAGAGAAACTTGCAGTTAGAAAAATGGAGGATAATAGGCCTTGGCCAGGCCATGGCCACCCCGACCCCAATGGGAACAATCTCCACAACAACGTTAGTTTTCCGAATGTGCGGGGTAATAGTCTTCATGTTTCGAGTTGGGCAGTGAATTCGGATCTGAGGCAGCCTGGTCCCCTTGAGATTTTTGCTCCTAGGGCCCCCACGAGTAGTGTCCTCGCAGAGCTGGCTAATGTTGGGAAACAGGATTTCAGACCTCAAAGGCAGGTGCAAATGCAAATTGACTTTACCGGAGCCACTTCCAGGCCTTCTTCAGCGAGACCGGTCGTCGGTGAATTGGAGCTTTCTGATGTTGAGGCCTCTTGCAGGGAGGAGCAACAACCCAGTTTTGCCGATGAAAGGAAGCCCAGGAAGCGGGGAAGGAAGCCTGCCAATGGAAGGGAAGCGCCCCTCAATCATGTGGAGGCGGAGAGGCAAAGACGCGAGAAGCTCAACCAACGCTTCTATGCGTTGAGATCTGTGGTGCCTAACATCTCCAAGATGGATAAGGCTTCATTGCTGGGAGATGCCATTGCTTATATCAACGAGCTTCAGGCTAAAGTCAGGATCATGGAAGCTGAAAAAGAGAGATTTGGAAGCACTTCAAATGATGGATCAGTCTTGGAAGCTAAGTTGAGATTGGAAAATCAGGAGAAAAAAGCTCCTGATGTGGATATTCAAGCTTTTCAAGATGAGGTCATTGTAAAGGTGAGCTGCCCTCTTGACAGTCACCCTGTTTCAAAAGTAATCCAAACATTTAACGAAGCACAGATCAGTGTTGTAGAGTCTAAACTTGCTGCTGCAAATGATACCATTTTTCACACATTTGTAATTAAGTCCCAAGGACCTGAACAGCTCACAAAGGACAAGTTGATTGCTGTTTTTTCTCCAACAGAATCCAACTCATTGCAGCCATTGTCACAGTTGGATAGCAAGGGAATTGCAGTCAGCATAGTCCATACGTAG 1860 0.372 MKLDAGVVWDDEDKAMLGAVLGGRALEFLMANWLSNESVLMAVGSEEGLQNKLSDLVERPNVSNFSWNYSIFWQLSHSKSGDWVLGWGDGCCREPSEEEEGSLGRGTLRLLRVDEEMQQRMRKRVLQKLHTTFGGEDEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLKSVSDYCVRSSLASSAGIQTIVLVPTDMGVVELGSVRMLPESFELLQAVKSVFSTQSPSYQGVSVSTGGNAVFPGLAIGDANKVDGGVSIPKVFVNTIGNRTHFREKLAVRKMEDNRPWPGHGHPDPNGNNLHNNVSFPNVRGNSLHVSSWAVNSDLRQPGPLEIFAPRAPTSSVLAELANVGKQDFRPQRQVQMQIDFTGATSRPSSARPVVGELELSDVEASCREEQQPSFADERKPRKRGRKPANGREAPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVRIMEAEKERFGSTSNDGSVLEAKLRLENQEKKAPDVDIQAFQDEVIVKVSCPLDSHPVSKVIQTFNEAQISVVESKLAAANDTIFHTFVIKSQGPEQLTKDKLIAVFSPTESNSLQPLSQLDSKGIAVSIVHT 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02418 619 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 49 235 IPR025610 -
Gma19g02418 619 Gene3D - 426 498 IPR036638 GO:0046983
Gma19g02418 619 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 5 595 - -
Gma19g02418 619 MobiDBLite consensus disorder prediction 403 444 - -
Gma19g02418 619 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 431 496 IPR036638 GO:0046983
Gma19g02418 619 SMART finulus 439 488 IPR011598 GO:0046983
Gma19g02418 619 CDD bHLH_AtAIB_like 430 502 - -
Gma19g02418 619 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 433 482 IPR011598 GO:0046983
Gma19g02418 619 PANTHER MYC 5 595 IPR045084 GO:0003700|GO:0006355
Gma19g02418 619 Coils Coil 479 499 - -
Gma19g02418 619 Pfam Helix-loop-helix DNA-binding domain 437 483 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02418 Gma-Chr19 52666677 52669073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02418 7 602 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.480 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma19g02418 bHLH-MYC_N 3.5e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02418 - - gmx:100801502 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02418 19 52666677 52669073 Gma19g02418 19 52666677 52669073 ECH
Gma19g02418 19 52666677 52669073 Gma03g02374 03 48860531 48861949 GST
Gma19g02418 19 52666677 52669073 Gma07g00515 07 4947616 4949038 PCT
Gma19g02418 19 52666677 52669073 Gma16g00214 16 2329955 2331693 PCT
Gma07g00515 07 4947616 4949038 Gma19g02418 19 52666677 52669073 PCT
Gma16g00214 16 2329955 2331693 Gma19g02418 19 52666677 52669073 PCT