Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02408 ATGGACATCTTGAAGGTCCTCTTCCACTTCTTCATATTTTTTCATGTCACATATGCATCAGATGACTGCAAATATTATTCTTGGTGCAGTGACAATAACATCCTTATTCGTTTCCCCTTTCAAATAGAAGGTCACCAACATCCTTATTGCGGCGGCTATCCTGGTTTCAAATTAACTTGCACCAATGATAGCAAAACAGTTATTAAACTTCCATACACGGGAAAGTTCATTGTCCGCAACATCAACTACCTCAGACAACAGATACAAGTCTATGACCCTGATAATTGCCTTCCAAAACGTCTTCTAAGCCTCAATCTTTCAGGCTCTCCCTTTGTTGCTGCTTCACTCCGCAACTACACCTTCTTAAGATGCCCAACTCGGAACGCAGGGTCACAATTCATTCCCATTGACTGTCTTAGCAATTCTACATCTTTCGTATCAGCTATTCTTTCAGTGAACTTGCCCAATCCATTGCCCGAGTCTTGCCATGTTATTAAGAAGCTCACATTTCCAGTTTCAAGGCCGGGACCATATGAGGAGATTTTCAGAGATGACCTTAGTGGAGATCTTCGATTAACATGGCATGCACCTGACTGTAGATATTGTGAATCACAAGAGGCCTTGTGCGGATTTGAGAGCATAAACAGTGATCAAGTTCGTTGTTTCTTTGATTACCAAACAGCTCCTCCACAACATGGTCTTCGAGTATTTGGAATCATCACATCATCTATTGTGGGACCAGCTATCATCTTTGTCATTGCAATTGCATGCTACGCGTCCTTAAAGTACAGAAGAGGCAATACAGCCAGAATTGCTGCTGCACAGAGGTCGGAACCAAGTGCAATATCACCCCAACCTTCCATTGCTACGATGGGCTTGGATGATTCTACAATCGAGTCTTATCAGAAACTTGTACTAGGGGAAAGCCGACGAGTGCCTGGACCCAATGACGGATGTTGCACCATATGCTTGTCAGAGTATAAAACCAAAGACACAATCAGATGCATTCCTGAGTGTGCACATTGTTTCCATGCCGAATGCATAGATGAATGGCTTCGCATGAATAGCACATGCCCCGTTTGCCGCAACTCCCCCTCCCATCCTTCTACTGCTCAAGTTATGGCCAGTGATCCTTGA 1137 0.438 MDILKVLFHFFIFFHVTYASDDCKYYSWCSDNNILIRFPFQIEGHQHPYCGGYPGFKLTCTNDSKTVIKLPYTGKFIVRNINYLRQQIQVYDPDNCLPKRLLSLNLSGSPFVAASLRNYTFLRCPTRNAGSQFIPIDCLSNSTSFVSAILSVNLPNPLPESCHVIKKLTFPVSRPGPYEEIFRDDLSGDLRLTWHAPDCRYCESQEALCGFESINSDQVRCFFDYQTAPPQHGLRVFGIITSSIVGPAIIFVIAIACYASLKYRRGNTARIAAAQRSEPSAISPQPSIATMGLDDSTIESYQKLVLGESRRVPGPNDGCCTICLSEYKTKDTIRCIPECAHCFHAECIDEWLRMNSTCPVCRNSPSHPSTAQVMASDP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02408 378 SUPERFAMILY RING/U-box 313 365 - -
Gma19g02408 378 Pfam Ring finger domain 320 362 IPR001841 -
Gma19g02408 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 366 IPR013083 -
Gma19g02408 378 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 1 370 - -
Gma19g02408 378 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Gma19g02408 378 CDD RING-H2_PA-TM-RING 319 362 - -
Gma19g02408 378 SMART ring_2 320 361 IPR001841 -
Gma19g02408 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 370 - -
Gma19g02408 378 Pfam Wall-associated receptor kinase galacturonan-binding 23 92 IPR025287 GO:0030247
Gma19g02408 378 Pfam Wall-associated receptor kinase C-terminal 161 223 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02408 Gma-Chr19 52606419 52608358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02408 19 366 C3H Transcription Factor Family AT2G25410 44.134 2.96e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02408 - - gmx:100799895 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02408 19 52606419 52608358 Gma19g02408 19 52606419 52608358 ECH
Gma19g02408 19 52606419 52608358 Gma03g02366 03 48799544 48799987 GST
Gma19g02408 19 52606419 52608358 Gma07g00524 07 5044303 5046809 PCT
Gma19g02408 19 52606419 52608358 Gma16g00225 16 2430646 2437724 PCT
Gma07g00524 07 5044303 5046809 Gma19g02408 19 52606419 52608358 PCT
Gma16g00225 16 2430646 2437724 Gma19g02408 19 52606419 52608358 PCT