Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02407 ATGGAGCAGAAGAGGAGCAGCAAGATGTACAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTCCTATTCCCCTCTCCGATCCTCTACGCGAGTTCCATCAAGGATCGCCTCTTCCAACTCACTGGAATCCCCGCCCACCACCAGCGCCTCGTCACCGGCTGTCGCCACCTCAACGATGACAAATCCGCTATCCAGTGCTCCCCGGGGGACGGCAACATGTTTCCCTCCGTGCGCCTCCTCCTGCGCCTCAAGGGCGGCAAGGGAGGCTTTGGCTCGCTTCTCCGTGGCGCCGCCACCAAGGCCGGCCAGAAGAAGACCAACAATTTCGACGCGTGCCGCGACATGAGTGGCCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTGGAGGAATGGAAGGCCGGAGAAGAGGAGAGGAAGCTCGAGAAGGTGGCCGAGGAGTTTCTCAAGAAGCAGATGAAGAAGGGCAAGGGAAAGGGTAAGGGTGAAGGTGACGGTGAGGCCCACAAGTATGTCGCAAAATATAGGGAGGAATCTGAACGTTGTGTTGCCGAGGTTGCCTTGTCTGTTAAAGAGGCTCTCACTGCCAAGCGCAAGAGCCCTTCACAACCCCACCATGATGCTAAGAAGTTGAAAATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATTATAGTGATGATTCTGATGAAGAGGGGGAGATGGAGAAATCGGAATTGTTGAATGGCCCGAATGAGTTGGGCTCAAATAAGGCTGAGGGCAGTTTGGGTTCGGTAAATGGGGGCGGAGGCTCTTCTGGTGCTGGCTCGTGTGAAAGTGGGTCTGAAGAAGAGAAGGAAACTGCTGTGGATGGAAATGTGGTATCTGTTGGGATGCTGAGTGGTGAAATTATTCACGCCACAGCTGAACCTGTGATAATCAATGAGGCTACTGAAATGCCAAAGGGGTCGGTGGTTGCTGAAGATAATCAGGATTGTCATGGAGGTGTGTCTGACAAGTTTGATGGTACTGTGAATCAGGCCTTGAATGTTATGGGCTCTGAAACCGTGGCTAGTGCTGGTGAATCTAATGATATGGAAATTGATGGATCTCTTGAGCATAAAGCAACTGTCAATGAAGGAAGTTCACCAAGCACTAGTGTTCCTGTGTTGGAGGAGCCCCTGAATTTTGATGCCTTTAATTCAGCTGCCGAACTTGAGGTTCTTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGATGGAGCGTGCTGCCAGGCTTTTTCTCTTAAAATCAACTCCCCTGGATGAACTTCCAAAGAAGCTGATTGCGAAGAATGTTCATATTGGGCTGTATTTTGATGTAATAAATACCGTTACCAGCAGCCAAAGGAAGCTGAACACTGTATAA 1431 0.5059 MEQKRSSKMYNLFVKHLDGKTLTLLFPSPILYASSIKDRLFQLTGIPAHHQRLVTGCRHLNDDKSAIQCSPGDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERKLEKVAEEFLKKQMKKGKGKGKGEGDGEAHKYVAKYREESERCVAEVALSVKEALTAKRKSPSQPHHDAKKLKIWMGKRKLNESDSDYSDDSDEEGEMEKSELLNGPNELGSNKAEGSLGSVNGGGGSSGAGSCESGSEEEKETAVDGNVVSVGMLSGEIIHATAEPVIINEATEMPKGSVVAEDNQDCHGGVSDKFDGTVNQALNVMGSETVASAGESNDMEIDGSLEHKATVNEGSSPSTSVPVLEEPLNFDAFNSAAELEVLGLERLKSELQSRGLKCGGTLMERAARLFLLKSTPLDELPKKLIAKNVHIGLYFDVINTVTSSQRKLNTV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02407 476 ProSitePatterns EF-hand calcium-binding domain. 233 245 IPR018247 -
Gma19g02407 476 Coils Coil 399 419 - -
Gma19g02407 476 ProSiteProfiles Ubiquitin domain profile. 10 75 IPR000626 GO:0005515
Gma19g02407 476 Pfam Replication stress response SDE2 C-terminal 386 452 - -
Gma19g02407 476 MobiDBLite consensus disorder prediction 198 288 - -
Gma19g02407 476 Gene3D - 2 91 - -
Gma19g02407 476 MobiDBLite consensus disorder prediction 248 277 - -
Gma19g02407 476 Pfam Silencing defective 2 N-terminal ubiquitin domain 10 155 IPR024974 -
Gma19g02407 476 SUPERFAMILY Ubiquitin-like 6 76 IPR029071 -
Gma19g02407 476 MobiDBLite consensus disorder prediction 201 228 - -
Gma19g02407 476 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 453 - -
Gma19g02407 476 PANTHER SPLICING FACTOR SF3A-RELATED 9 453 - -
Gma19g02407 476 CDD Ubl_ubiquitin_like 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02407 Gma-Chr19 52602734 52606125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02407 386 457 C2H2 Transcription Factor Family AT5G06160 43.056 1.53e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02407 K25059 - gmx:100799364 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02407 19 52602734 52606125 Gma19g02407 19 52602734 52606125 ECH
Gma19g02407 19 52602734 52606125 Gma03g02365 03 48796075 48799326 GST