Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02406 ATGAAGAACTGGAGGAGAGATTCAGATATCCTTCCTGTAACTGTAAGTGATGGAAAGAGAACTATGAAGAAAATTTTTGATCCACAGGAACCACTCCTTCAGAAATGGAACAAAATCTTTGTAATAATGTGCATATTGTCAGTCGCATTGGACCCACTCTTCTTTTACATTCCAGTGATTAATGAAGATAAAAAATGCCTTCATTTGGATGGAGCATCGAAGATCACTGTCTGTGTCTGTGTTCTTCGGACTTTCTTTGATCTATTTTACATTCTTCGCATAATCTTTCAGTTTAAGACAGGTTTCAAGACCCCTTTTTCTCGTGTTTTTGGAAGGGATGAGCTCATTCATGATCCTGTGCCTATAATGAAAAGATACTTAACTTCACACTTCATCATTGATATTCTATCAATTATTCCACTTCCGCAGGTGATTTTTTTAGCCATTCCAAACCTGAAATCACCGGATCCATTAGTAGTAAAGGATTTGTTGAAGTATTCAGTATTGATCTTGTATGTGCCAAGGCTGTGGCGGATCTATCCACTATACCAAGAAGTAAAGAAAACTATTGGAATATTCACTGAGAAAGCATGGGCTGGAGCTACCTTTAATCTTTTTCTCTTTACCCTAGCAAGTCATATGGTTGGAGCCGTCTGGTACATGCTTTCTATAGAGTCAGAGGTGTGGTGCTGGCGCAGAGAGTTGAAGAATGCTTCACTCTTTCATGAAGAATACTTGAGTTGTGGACACGGCGATCAAAATGTCTTTCAACTTCTCAATAAAACTTGTTCTTTCATTGACCCTGATAAAATCATAGACAAAAACACCTTCAATTTTGGAATATTCTTTGATGCTTTAGATTCAGGTGTGGTAGAATCTACAACAGATCTTCATCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCCCTTGGACAAAACCTCAAAACAAGTATTAATGTCATAGAGATAGCCTTTGCAATCTTTATTGCCATTGTTGGATTGGTTTTGTACTCATTGCTTATTGGAAACATGCAGAAATATCTTCATCAATATACGCAATCTAAaaactttatagaggaaaagaagagaaactttatagaggaaaagaagagaGTGAAGCGGAGACATGAAATAGAACTCTGGATGTCCCACCGAATGCTACCTGAGGACTTAAAGCAAAGAATTAGACGTTTTGAACATTACAAATGGCAAGAAAATAGCGGTGTTGACGAGGAGGCATTAATTCGTAACCTTCCTAAAGATCTCAGAAGGGACACTAAGCGTCACCTTTGCTTAGCTTTAGTTAGAAGGGTGCCAATGTTTGGATTAATGGATCAGCAGTTGTTGGGTGCAATGTGCGATAGACTGAAGACAGTCCTTTATGATAAGCATAGCTGCATTGTTTGTGAAGGAGATCCACTTGATGAGATGGTTTTCATTATGAGTGGAAAAGTTTATTCTGTGACAACAAATGGTGGAGGATCTGGTTTCCTCAAGGCTGGTGACTTTTGTGGAGAGGAACTTCTGACATGGGCTTTGGATCCCAACTCCTCCTCAAATCTACCCATTTCAACCAGGACAGTACAAACTATGTCAGAAGTTGAAGCCTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGTTTCCCAATTTCGACACCTTCACAGCAAACAGCTCCAACAGGTTTTCAGGTTCTATTCTTCACAGTGGAGGAGATGGGCTGCTACTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGATTGAGAGGTCATTGCGCGAAGCAGAAGATGAGCTACAAGATGCTTTTGCAAATGAGGAAGGGTCTAGTCTAAGCCTTGGTGCAACCATATATGCATCAAGGTAA 1887 0.3879 MKNWRRDSDILPVTVSDGKRTMKKIFDPQEPLLQKWNKIFVIMCILSVALDPLFFYIPVINEDKKCLHLDGASKITVCVCVLRTFFDLFYILRIIFQFKTGFKTPFSRVFGRDELIHDPVPIMKRYLTSHFIIDILSIIPLPQVIFLAIPNLKSPDPLVVKDLLKYSVLILYVPRLWRIYPLYQEVKKTIGIFTEKAWAGATFNLFLFTLASHMVGAVWYMLSIESEVWCWRRELKNASLFHEEYLSCGHGDQNVFQLLNKTCSFIDPDKIIDKNTFNFGIFFDALDSGVVESTTDLHQKFFYCFWWGLRNLSSLGQNLKTSINVIEIAFAIFIAIVGLVLYSLLIGNMQKYLHQYTQSKNFIEEKKRNFIEEKKRVKRRHEIELWMSHRMLPEDLKQRIRRFEHYKWQENSGVDEEALIRNLPKDLRRDTKRHLCLALVRRVPMFGLMDQQLLGAMCDRLKTVLYDKHSCIVCEGDPLDEMVFIMSGKVYSVTTNGGGSGFLKAGDFCGEELLTWALDPNSSSNLPISTRTVQTMSEVEAFALMADDLKFVVSQFRHLHSKQLQQVFRFYSSQWRRWAATFIQAAWRRYWKKKIERSLREAEDELQDAFANEEGSSLSLGATIYASR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02406 628 Pfam Cyclic nucleotide-binding domain 465 554 IPR000595 -
Gma19g02406 628 Gene3D Helix hairpin bin 358 436 - -
Gma19g02406 628 Coils Coil 592 612 - -
Gma19g02406 628 Pfam Ion transport protein 36 359 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gma19g02406 628 Gene3D Jelly Rolls 443 558 IPR014710 -
Gma19g02406 628 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 1 628 - -
Gma19g02406 628 Gene3D - 35 355 - -
Gma19g02406 628 ProSiteProfiles cAMP/cGMP binding motif profile. 445 524 IPR000595 -
Gma19g02406 628 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 628 - -
Gma19g02406 628 ProSiteProfiles IQ motif profile. 576 605 IPR000048 GO:0005515
Gma19g02406 628 SUPERFAMILY cAMP-binding domain-like 374 566 IPR018490 -
Gma19g02406 628 SMART cnmp_10 445 571 IPR000595 -
Gma19g02406 628 SUPERFAMILY Voltage-gated potassium channels 28 354 - -
Gma19g02406 628 Coils Coil 360 380 - -
Gma19g02406 628 CDD CAP_ED 445 571 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02406 Gma-Chr19 52596643 52600693 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02406 14 628 Ion Channels AT5G53130 60.835 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02406 K05391 - gmx:100797784 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02406 19 52596643 52600693 Gma19g02406 19 52596643 52600693 ECH
Gma19g02406 19 52596643 52600693 Gma03g02362 03 48781642 48786026 GST
Gma19g02406 19 52596643 52600693 Gma16g00228 16 2446341 2457699 PCT
Gma16g00228 16 2446341 2457699 Gma19g02406 19 52596643 52600693 PCT