LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma19g02404	ATGAATGCAAAGGGACATAAATTTGTGAGGTTTGAGGACTGGAAATCAGAGTCATCTTTTAGTCCAGAGCAAGAAGATTCTATTGACAGTGGGAATCACAAAAGAAGACCAAGTGTGGGTACTGTTTTAAAGAGTATAGGAAGAAGGCTTGAGAGTGGGTCGGAGAAGATGAAGAACTTGAGAAGAGCTTCAGCTGTCCATCCTGTAAGTGATGGACAGAAAAAGCTGCCACCTAGGAAGAAAATTCTTGATCCACAGGGTCCGGTCCTTCAGAAATGGAACAAAATCTTTGTAATAACGTGTGTGCTGGCTGTCTCTGTGGACCCGCTCTTCTCTTACATTCCGGTGATAAATAATGAGGAAAAATGTGTTCATTTGGATGGAGCATTGCAGATCACTGCCAGTGTTCTTCGCACCTTCTTTGATCTATTCTACATTCTTCGCATAATCTTTCAGTTTAAGACAGCATTCATTCCCCCTTCTTCTCGTGTTTTTGGAAGGGGTGAGCTCATTGATGATCCTGTGGCTATAATGAAAAGATACTTAACTTCACACTTCATCATTGATATTCTATCAATTATTCCACTTCCACAGGTGATTGTTTTAGCCATAAATCGAAATTCGAAAACATCAGATCCATTTGTAGCAAAGGATTTGTTGAAGTATTCAGTATTAATCCAGTATGTGCCAAGGCTTTTGCGGATGTATCCACTATTCAAAGAAGTAACTAGAACTTCTGGCATATTGACCGAGACAGCATGGGCTGGAGCTGCTTTTAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTAACTGGTATATGCTTTCGGTAGAGTCAGAGTTGCGGTGTTGGCGCAGAGAGTTAAGGAATGCTTCACTCTATCATCGAAAATACATGAGTTGTGTAGACCGCAATCCAAATGTCTTTACACTTCTCAATCGAACTTGTTCTTTGGTTGACCCTGACACAATCAAAGACCCAAACACCTTCAATTATGGAATATTTTTTGATGCTCTAGATTCACGTGTTGTAGAATCAACAACAGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAATCTAAAGACTAGTACTGATGTCTCAGAAATAGCTTTTGCAATCTTCATTGCCATCTTTGGATTGGTCTTATTCTCATTACTTATTGGAAACATGCAGAAATATCTGCAATCTACAACTGTAAGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCAGAACAGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAGGGAAAGAATTAGAAAGTACGAACAGTACCAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGTAACCTTCCTAAAGATCTCAGAAGGGACATTAAGCGTCACCTTTGCTTAACTTTAGTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGTGATAGACTGAAGCCAGTCCTTTATACTGAGAAGAGCTACATTGTTCGTGAAGAAGATCCAGTTGATGAGATGCTTTTCATTATGCGCGGAAAAGTTTCGACCATGACAACGAATGGTGGAAGAACTGGTTTCTTCAACTCCATGTTCCTCAAGGCTGGTGACTTTTGTGGAGAGGAACTTCTGACATGGGCTTTGGATCCCAACTCCTCCTCAAATCTACCCATTTCAACCAGGACAGTAGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCACGGCTGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGCCTTCACAGCAAACAGCTCCAACACGCTTTCAGGCAAGGCTTGATAATTTATATCATGTTCTATTCCTCACAGTGGAAGACATGGGCTGCTACTTTCATACAAGCAGCTTGGCGTCGATACTGGAAAAAGAAGATTGAGAGGTCATTGCGCGAAGCAGAAGATGAGCTACAAGATGCTTTGGCAAATGAGGAAGAGTCTAGTCTAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCCAATGCACTGCGAAATTTGAGAGAAAATAGCAGACACAATAGAATGCAACAGAGACTACTACCTCTGTTACCTCCAAAGCCAGCTGAACCAGATTTCACTTCTCAGAAACACTAA	2175	0.4133	MNAKGHKFVRFEDWKSESSFSPEQEDSIDSGNHKRRPSVGTVLKSIGRRLESGSEKMKNLRRASAVHPVSDGQKKLPPRKKILDPQGPVLQKWNKIFVITCVLAVSVDPLFSYIPVINNEEKCVHLDGALQITASVLRTFFDLFYILRIIFQFKTAFIPPSSRVFGRGELIDDPVAIMKRYLTSHFIIDILSIIPLPQVIVLAINRNSKTSDPFVAKDLLKYSVLIQYVPRLLRMYPLFKEVTRTSGILTETAWAGAAFNLFLYMLASHVVGANWYMLSVESELRCWRRELRNASLYHRKYMSCVDRNPNVFTLLNRTCSLVDPDTIKDPNTFNYGIFFDALDSRVVESTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTDVSEIAFAIFIAIFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLRERIRKYEQYQWQENRGVEEEALIRNLPKDLRRDIKRHLCLTLVKKVPMFEKMDEQLLDAMCDRLKPVLYTEKSYIVREEDPVDEMLFIMRGKVSTMTTNGGRTGFFNSMFLKAGDFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALTADDLKFVASQFRRLHSKQLQHAFRQGLIIYIMFYSSQWKTWAATFIQAAWRRYWKKKIERSLREAEDELQDALANEEESSLSLGATIYASRFAANALRNLRENSRHNRMQQRLLPLLPPKPAEPDFTSQKH	724

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma19g02404	724	MobiDBLite	consensus disorder prediction	15	33	-	-
	Gma19g02404	724	SUPERFAMILY	Voltage-gated potassium channels	84	410	-	-
	Gma19g02404	724	Gene3D	Helix hairpin bin	415	479	-	-
	Gma19g02404	724	Coils	Coil	648	675	-	-
	Gma19g02404	724	CDD	CAP_ED	488	617	IPR000595	-
	Gma19g02404	724	ProSiteProfiles	IQ motif profile.	632	661	IPR000048	GO:0005515
	Gma19g02404	724	Gene3D	Jelly Rolls	486	606	IPR014710	-
	Gma19g02404	724	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN	7	722	-	-
	Gma19g02404	724	Pfam	Ion transport protein	93	416	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Gma19g02404	724	MobiDBLite	consensus disorder prediction	702	724	-	-
	Gma19g02404	724	Gene3D	-	95	412	-	-
	Gma19g02404	724	MobiDBLite	consensus disorder prediction	15	81	-	-
	Gma19g02404	724	ProSiteProfiles	cAMP/cGMP binding motif profile.	488	572	IPR000595	-
	Gma19g02404	724	SUPERFAMILY	cAMP-binding domain-like	417	613	IPR018490	-
	Gma19g02404	724	SMART	cnmp_10	488	619	IPR000595	-
	Gma19g02404	724	Pfam	Cyclic nucleotide-binding domain	508	599	IPR000595	-
	Gma19g02404	724	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	7	722	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma19g02404	Gma-Chr19	52588423	52592287	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma19g02404	1	721	Ion Channels	AT5G53130	63.512	0.0	914

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma19g02404	K05391		-	gmx:100797784	1408.28