LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma19g02399	ATGGAAGAGAGCACCAAGAGGAAACACACTAGTCTGATCCATGAACTAATCCAAGGAAAGGAACTAACAAAGCAGCTTAGTAACCACCTGGTTTCATCTTCTCCAATGTCCCATCAAACCAATGAATTGTTTGTTGAGAAAATACTTTTGTCTTATGAGAAAGCACTCACCATGCTGAACTGGGGCTCTATTATGGGAGAGGCCAAGACCACCAGTGGCAACATCATGGATTCCCATTGTTCTTTTACAAATGGTGGGAGCCCCAGAAGTGAGGTCGTGGACCGTGAATTGGAGCACAAAGCTGCCCTCAAGAAAAGAAAGACCATGCCCAGATGGACCGAGCAAGTGAAGATTTGCTCAAGAAGAGGACTTGAAGGGTCATTGGATGATGGATATAGCTGGAGAAAATATGGCCAAAAGGATATTCTCAGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTACAAGGGTGTCTAGCAACAAAACAAGTTCAAAGGTCAGATGAAGACCCAACAACAATTGAGGTGACCTACAGAGGAAGACATACATGCACGCAAGCTAAGCATTTAAACAAGGCATTCCCATCAAACATCAAGGCATGTTTGGGAGAAAATCAATTTCAAAAGAATCAACCACTTCTAGAGAAAATACAACAACAAACCCCTGAGGTGATTTTCACCTTTGAAACAGAGCTTAAAGTCAAAACAGAGGAATTGGAAACCAAGGAGGATATCTTCCCATGGTTTTCCTTTCCTTCTCCATCAATTGGATCAGAAAACGAGGACAACATGTTACCCGAGACTATGTTTGAAAACCATTTCATGGAAAGCTTCTCTCCAGTATTCTTATCACCAGCGACTTCAGAATCAAACCCTTTCTGTTTGTCAGCGTACCACTTGGACAGCACTGGACTATTATGCCAAAACATACAAACCTCAGAATCTGATATCACTGAGATAGTTTCAGCCCCAACTTCAGTCACCAAGTCCCCAATCCTGGATTTGGATATCTTGCTTGATAAAGGGGATTTTGACACGGATTTCCCTTTCAACATTCCTGAATTTTTCTCTTCATAA	1089	0.4178	MEESTKRKHTSLIHELIQGKELTKQLSNHLVSSSPMSHQTNELFVEKILLSYEKALTMLNWGSIMGEAKTTSGNIMDSHCSFTNGGSPRSEVVDRELEHKAALKKRKTMPRWTEQVKICSRRGLEGSLDDGYSWRKYGQKDILRAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKHLNKAFPSNIKACLGENQFQKNQPLLEKIQQQTPEVIFTFETELKVKTEELETKEDIFPWFSFPSPSIGSENEDNMLPETMFENHFMESFSPVFLSPATSESNPFCLSAYHLDSTGLLCQNIQTSESDITEIVSAPTSVTKSPILDLDILLDKGDFDTDFPFNIPEFFSS	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma19g02399	362	SMART	WRKY_cls	128	190	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma19g02399	362	PANTHER	WRKY TRANSCRIPTION FACTOR 41-RELATED	1	355	-	-
	Gma19g02399	362	SUPERFAMILY	WRKY DNA-binding domain	127	190	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gma19g02399	362	Pfam	WRKY DNA -binding domain	129	188	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma19g02399	362	ProSiteProfiles	WRKY domain profile.	123	186	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gma19g02399	362	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	1	355	IPR044810	GO:0003700
	Gma19g02399	362	Gene3D	WRKY domain	115	191	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma19g02399	Gma-Chr19	52546413	52549172	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma19g02399	11	256	WRKY Transcription Factor Family	AT4G23810	38.182	3.71e-48	164

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gma19g02399		WRKY	2.4e-26	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma19g02399	19	52546413	52549172	Gma16g00238	16	2573087	2576271	ECH
	Gma19g02399	19	52546413	52549172	Gma19g02399	19	52546413	52549172	ECH
	Gma01g02250	01	57675046	57677042	Gma19g02399	19	52546413	52549172	ECH
	Gma05g02103	05	42274814	42276126	Gma19g02399	19	52546413	52549172	ECH
	Gma08g00208	08	1800899	1802212	Gma19g02399	19	52546413	52549172	ECH
	Gma19g02399	19	52546413	52549172	Gma03g02359	03	48760348	48763203	GST
	Gma19g02399	19	52546413	52549172	Gma07g00537	07	5178644	5181564	PCT
	Gma19g02399	19	52546413	52549172	Gma16g00238	16	2573087	2576271	PCT
	Gma07g00537	07	5178644	5181564	Gma19g02399	19	52546413	52549172	PCT
	Gma16g00238	16	2573087	2576271	Gma19g02399	19	52546413	52549172	PCT