Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02378 ATGCCGAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAAGAACGAGGCGGACGACGAGAAGCGAGAGCTGGTGTTCAAGGAGGACGGGCAGGAGTACGCGCAGGTGCTCCGGATGCTGGGGAACGGGCGGTGCGAGGCGATGTGCATCGACGGGACGAAGAGGCTCTGCCACATCCGCGGGAAGATGCACAAGAAGGTGTGGATCGCCGCCGGAGACATCATCCTGGTTGGACTCAGGGACTACCAGGACGACAAGGCTGACGTCATCCTCAAGTACATGCCCGACGAGGCCAGGCTCCTCAAGGCCTACGGCGAGCTCCCCGACACCACTCGCCTCAACGAGGGCATCGGCGCCGGCTTGGACGAGGAGGACGACGCCACCGCCAACGACTACATCGAGTTCGAGGATGAGGATATTGATAAAATCTAA 438 0.6027 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDTTRLNEGIGAGLDEEDDATANDYIEFEDEDIDKI 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02378 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Gma19g02378 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A 1 145 - -
Gma19g02378 145 MobiDBLite consensus disorder prediction 1 25 - -
Gma19g02378 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Gma19g02378 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Gma19g02378 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Gma19g02378 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Gma19g02378 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Gma19g02378 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Gma19g02378 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Gma19g02378 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Gma19g02378 145 Gene3D - 2 145 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02378 Gma-Chr19 52372967 52374120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02378 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 88.276 3.61e-89 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02378 K03236 - gmx:100818207 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02378 19 52372967 52374120 Gma19g02378 19 52372967 52374120 ECH
Gma19g02378 19 52372967 52374120 Gma03g02337 03 48592230 48593245 GST
Gma19g02378 19 52372967 52374120 Gma07g00568 07 5461465 5462334 PCT
Gma19g02378 19 52372967 52374120 Gma16g00267 16 2820176 2821048 PCT
Gma07g00568 07 5461465 5462334 Gma19g02378 19 52372967 52374120 PCT
Gma16g00267 16 2820176 2821048 Gma19g02378 19 52372967 52374120 PCT