Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02364 ATGTCTGAAGTGAATGCGACCCCTGAAATCCCTCAAAACAACACCATCTACATCAACAACCTCAACGAAAAGATTAAGATTGATGGCATGCTATTTTTGAAGAAGTCTTTGAACGCTGTTTTCACTCAGTTCGGGAAGATACTTGAGGTGTTAGCTTTCAAAACCCTGAAGCACAAAGGTCAAGCTTGGGTGGTCTTTGAAGATGCCTCTTCTGCTTCCAATGCCCTAAGGCAAATGCAAGGTTTCCCCTTCTATGATAAGCCCATGAGAATACAGTATGCAAAGACCAAGTCTGATATAATAGCAAAAGCAGATGGTACTTTTGTTCCTAGGGAAAAACGTAAGAGGCATGATGAGAAAGCCAAAAAGCGGAAGGACCAACATGATTCTAATTTAGCTGGAATGGGCCTAAATCCAGCTTATGCTGGTGCTTATGGTGCAGCACCTGCTATAGCTTATCCAGGTGGTGCAAAATCTATGGTACCTGAGGCTCCTGCACCACCAAATAATATTCTCTTTATTCAGAATCTTCCCAATGACTCAACTCCCATGATGCTGCAAATGCTCTTTCTCCAGTATCCTGGATTTAAGGAAGTTCGAATGGTTGAAACAAAGCCAGGGATTGCCTTTGTGGAATATGGAGATGAAATGCAATCCACAGTGGCCATGCAGACACTACAAGGTTTCAAGATAACCCCACAAAACCCTATGTTGATAACTTATGCCAAGAAATAG 735 0.4231 MSEVNATPEIPQNNTIYINNLNEKIKIDGMLFLKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDEKAKKRKDQHDSNLAGMGLNPAYAGAYGAAPAIAYPGGAKSMVPEAPAPPNNILFIQNLPNDSTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYAKK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02364 244 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 6 244 - -
Gma19g02364 244 SMART rrm1_1 171 240 IPR000504 GO:0003723
Gma19g02364 244 SMART rrm1_1 15 92 IPR000504 GO:0003723
Gma19g02364 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 231 IPR000504 GO:0003723
Gma19g02364 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 89 IPR000504 GO:0003723
Gma19g02364 244 CDD RRM1_U1A_like 15 95 - -
Gma19g02364 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 244 IPR000504 GO:0003723
Gma19g02364 244 Gene3D - 158 244 IPR012677 -
Gma19g02364 244 CDD RRM2_U1A_like 168 240 - -
Gma19g02364 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 96 IPR000504 GO:0003723
Gma19g02364 244 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 6 244 - -
Gma19g02364 244 SUPERFAMILY RNA-binding domain, RBD 12 233 IPR035979 GO:0003676
Gma19g02364 244 MobiDBLite consensus disorder prediction 111 132 - -
Gma19g02364 244 Gene3D - 7 117 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02364 Gma-Chr19 52262021 52265248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02364 3 140 Eukaryotic Initiation Factors Gene Family AT4G34110 27.660 6.91e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02364 K11091 - gmx:100777062 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02364 19 52262021 52265248 Gma03g02324 03 48489814 48493102 GST