Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g02363 CTGTTACTGTTGAAGTCAACTGATGGTTCTGATGTTGAATGGAGCAAAGAAGTCAAGGGGAACATGTATGATATGATTGTTGAAGGTTTTCAGCTATTAAGCAGATGGACTGCACGCATATGGGAACAATGTGCTTGGAAATTTTCTCGACCATGCAAAGATGCATCCCCATCATTCTCTGATTATGAAAAGGTAGTACGATATAATTACAGTGCAGAGGAAAGGAAAGCACTGGTTGAACTTGTGAGCTACATAAAGAGTGTTGGATCTATGATGCAGCGGTGTGATACACTGGTTGCTGATGCTTTATGGGAAACAATACATTCTGAGGTACAAGATTTTGTCCAAAACACATTAGCTACTATGTTGCGGACTACCTTCAGAAAGAAGAAGGACCTCTCTAGGATTCTTTCAGATATGCGGACCCTTTCAGCTGATTGGATGGCTAATACAAACAAGTCAGAATCTGAGTTACAGTCCTCTCAGCATGGAGGTGAAGAAAGCAAAGCAAACATATTTTATCCAAGAGCAGTTGCCCCAACTGCTGCTCAGGTGCACTGCTTGCAGTTCTTAATATATGAGGTGGTTTCTGGTGGTAACCTTAGGAGGCCAGGTGGACTCTTCGGCAATAGTGGCTCAGAAATTCCAGTTAATGATTTAAAACAGCTGGAGACATTTTTTTACAAGCTTGGTTTTTTCCTTCATATTTTAGACTACTCAGCAACTGTTGCAACATTGACAGATCTTGGTTTCTTATGGTTTAGAGAATTCTATTTAGAGTCTTCACGAGTCATTCAGTTTCCAATTGAATGCTCCCTTCCTTGGATGTTGGTGGATTGTGTACTTGAGTCACCGAATTCTGGTCTTCTCGAGAGTGTTCTAATGCCATTTGACATCTATAATGATTCAGCTCAGCAAGCCTTGGTGTTGCTGAAGCAACGGTTTTTATACGATGAAATTGAGGCTGAGGTGGATCATTGTTTTGATATATTTGTTACAAAATTATGTGAAACCATTTTCACATATTACAAAAGTTGGGCGGCATGTGAATTGCTTGATCCTTCATTCCTCTTTGCTTCGGACAATGCAGAAAAGTATGCCGTGCAACCCATAAGGCTCAATATGCTGCTTAAAATGACTAGAGTGAAGCTGCTTGGAAGGATGATTAATTTGCGAAGTTTGATCACTGAACGGATGAACAAGGTTTTCCGTGAAAATATTGAGTTTTTATTTGATCGTTTTGAGTGTCAGGATCTGTGTGCCATAGTGGAATTAGAGAAGTTGTTGGATGTCTTAAAACATTCCCATGAACTACTGTCTAGAGATCTTTCTGTAGACTCTTTTAGTCTCATGTTGAATGAGATGCAAGAGAACATTTCCCTTGTATCATTTTCTAGTCGATTGGCCTCACAGATTTGGTCTGAGATGCATAGTGATTTTTTGCCAAATTTCATTCTCTGCAATACTACTCAACGTTTTATCAGATCATCAAGAACGGTTCCTGTTCAAAAGCCATCTGTACCCTCTTCTAAGCCTAGTTTCTATTGTGGTACTCAAGATTTGAATTCTGCCCATCAAAGTTTTGCACGACTGCATAGTGGATTCTTTGGAACACCTCACATGTTTTCTATTGTTCGACTTCTGGGATCCCGATCATTACCTTGGCTTATTAGAGCTCTTCTTGATCACATATCAAACAAGATTACTTTGCTTGAACCAATGATTACAGGATTACAAGATTCTTTGCCAAAATCAATTGGGCTTCTTCCTTTCGATGGAGGTGTGACAGGTTGTGTGAGACTCGTTAAGGAGCATCTTAACTGGGAGACAAAATCAGAACTGAAAGCTGAGGTTCTTCATGGCATAAAAGAGATTGGAAGTGTATTATATTGGATGGGGCTTCTAGATATTGTGTTGAGAGAAAAGGATTCTATGGATTTCATGCAAACTGCTCCCTGGCTGGGCTTGCTTCCTGGAGCAGATGGTCAAATAGTAACTTCTCAAGATGGTGGAGACAGCCCTGTTGTTAGTTTGTTTAAATCAACAGCTGCTGCAATGGTTTCATACCCTGGCTGTCCATCACCTACCTCTTTCCACATTATGTCAAAACAAGCAGAAGCTGCAGATCTTTTATACAAGGCTAACTTGAACACTGGAAGTGTGCTGGAGTATGCACTTGCTTTCGCTAGTGCTGCGTTGGATAAATATTGTAATAAATGGAGTGCTGCACCCAAAACGGGCTTCATTGACATCACAATTTCTAAAGATTTCTATCGAATATACAGTGGTCTCCAAATTGGATACTTGGAAGAATCTGCCCAAGTGCCATCAAATAGTCATGAAAGGCTGGGAGATTCAATTGCTTGGGGGGGCTGCACTATAATTTATTTGCTTGGGCAGCAGCTGCATTTTGAGCTGTTTGACTTTTCATATCAGATCCTCAATATCGCAGAAGTGGAGGCTGCATCTGTTATGCAAACACATAAGAACTCACAATTTGCCGTGCAGGGATGGGAAGCCTTATTGGAAGCAATGAAAAAAGCAAGGAGATTAAATAACCATGTATTTTCTATGCTTAAAGCACGTTGCCCCCTTGAAGAAAAGACAGCTTGTGCTATTAAGCAAAGTGGTGCTCCAATACATCGTATAAAATTTGATAACACAGTTTCAGCATTTGAAACACTGCCGCAGAAAGGCGGTGTAGGAGCAGAGAAGAGTAACGGGGAATGGAAACAAATAAAGGTGCATATATCAGTAGGTTCCTGTAATCCCGTGTGCATAGACTTAAGAATAATGGCCAAGAGGGAGCAGCGATTGAGAGGAGTGTCGGCATCGGAATTGAAGGAGAAGTTGCGGGAATTGGTGAAGTCCATCGTGGACTCCGACGACTACACGCTTGAAGCCGCCGACGAAGCCATAGCCACCCTTTCTTCTCTGAAACATTTAAAGTCCCCCATCCCCGACGACTTTCCTCTTCCTCCCCAATTTCGCTGCCCCATTTCAACCCAATTGATGTCCGATCCCGTTATCCTATCCACCGGCCAGACTTACGACAGGCCATTTATTCAGAGGTGGTTGAATGAGGGTCACAGAACATGTCCTCAGACACAACAGGTTCTTTCTCACACAATTCTAACTCCCAATTACTTGGTCCGAGACATGATTCTCCTGTGGTGTCGGGACCGTGGAATTGACCTACCTAACCCTGCTAAGGACCTCGATGAAGTTGTCACCAATGCCGATAGAAACCATTTGAATTCGTTGCTTCGTAAGTTGCAATTGTCTGTTCCTGATCAGAAAGAAGCTGCCAAGGAGCTTCGCCTTTTGACAAAGCGAATGCCTTCCATTCGAACCCTTGTTGGGGAGTCCAGTGATACCATTCCCCTGTTGCTGAGTCCGTTAGCTGCGGCCTCAACTGACCCTGATCTCCATGAGGACTTGATCACCACGGTTCTCAATCTCTCAATTCATGATGACAATAAGAAGTCGTTTGCGGAGGATCCTGCGCTGATTTCTCTGCTTATTGATGCCTTGAAATGTGGCACTATTCAAACAAGGAGTAATGCTGCGGCTGCTATTTTCACGTTGTCGGCTATTGATTCCAACAAGCACATCATTGGAGAATCTGGAGCCATTAAACACTTGCTTGAGCTTTTGGATGAGGGACAACCATTGGCCATGAAAGATGCTGCTTCAGCCATATTTAACCTGTGTCTTGTGCACGAGAATAAGGGGAGGACCGTTCGAGATGGGGCGGTTCGGGTTATTCTCAACAAGATGATGGACCACATACTAGTTGATGAGTTGTTGGCTATATTAGCACTTCTCTCCAGCCATCCCAAGGCTGTTGAAGAAATGGGTGATTTTGATGCCGTTCCTTTGTTATTGGGGGTTATTAGGGAGAGCACATCAGAGAGAAGCAAGGAAAATTGTGTTGCAATTCTGTATACAATCTGTTTTAGTGATAGAACAAAGTTGAAGGAAATTAGAGAAGAAGAAAAAGCCAATGGTACACTGACAAAGCTTGGAAAATGTGGAACTTCAAGGGCAAAAAGGAAGGCTAATGGTATTCTTGAGAGGCTTAATAGATCCCCCTCCTTAACTCACACTGCTTAG 4116 0.4244 LLLLKSTDGSDVEWSKEVKGNMYDMIVEGFQLLSRWTARIWEQCAWKFSRPCKDASPSFSDYEKVVRYNYSAEERKALVELVSYIKSVGSMMQRCDTLVADALWETIHSEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTNKSESELQSSQHGGEESKANIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRRPGGLFGNSGSEIPVNDLKQLETFFYKLGFFLHILDYSATVATLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQRFLYDEIEAEVDHCFDIFVTKLCETIFTYYKSWAACELLDPSFLFASDNAEKYAVQPIRLNMLLKMTRVKLLGRMINLRSLITERMNKVFRENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSRDLSVDSFSLMLNEMQENISLVSFSSRLASQIWSEMHSDFLPNFILCNTTQRFIRSSRTVPVQKPSVPSSKPSFYCGTQDLNSAHQSFARLHSGFFGTPHMFSIVRLLGSRSLPWLIRALLDHISNKITLLEPMITGLQDSLPKSIGLLPFDGGVTGCVRLVKEHLNWETKSELKAEVLHGIKEIGSVLYWMGLLDIVLREKDSMDFMQTAPWLGLLPGADGQIVTSQDGGDSPVVSLFKSTAAAMVSYPGCPSPTSFHIMSKQAEAADLLYKANLNTGSVLEYALAFASAALDKYCNKWSAAPKTGFIDITISKDFYRIYSGLQIGYLEESAQVPSNSHERLGDSIAWGGCTIIYLLGQQLHFELFDFSYQILNIAEVEAASVMQTHKNSQFAVQGWEALLEAMKKARRLNNHVFSMLKARCPLEEKTACAIKQSGAPIHRIKFDNTVSAFETLPQKGGVGAEKSNGEWKQIKVHISVGSCNPVCIDLRIMAKREQRLRGVSASELKEKLRELVKSIVDSDDYTLEAADEAIATLSSLKHLKSPIPDDFPLPPQFRCPISTQLMSDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHTILTPNYLVRDMILLWCRDRGIDLPNPAKDLDEVVTNADRNHLNSLLRKLQLSVPDQKEAAKELRLLTKRMPSIRTLVGESSDTIPLLLSPLAAASTDPDLHEDLITTVLNLSIHDDNKKSFAEDPALISLLIDALKCGTIQTRSNAAAAIFTLSAIDSNKHIIGESGAIKHLLELLDEGQPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILNKMMDHILVDELLAILALLSSHPKAVEEMGDFDAVPLLLGVIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKANGTLTKLGKCGTSRAKRKANGILERLNRSPSLTHTA 1371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g02363 1371 SMART arm_5 1199 1239 IPR000225 GO:0005515
Gma19g02363 1371 SMART arm_5 1279 1320 IPR000225 GO:0005515
Gma19g02363 1371 SMART arm_5 1157 1198 IPR000225 GO:0005515
Gma19g02363 1371 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 313 335 IPR008081 GO:0030833|GO:0031267
Gma19g02363 1371 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 246 264 IPR008081 GO:0030833|GO:0031267
Gma19g02363 1371 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 756 772 IPR008081 GO:0030833|GO:0031267
Gma19g02363 1371 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 371 401 IPR008081 GO:0030833|GO:0031267
Gma19g02363 1371 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 59 77 IPR008081 GO:0030833|GO:0031267
Gma19g02363 1371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 991 1065 IPR013083 -
Gma19g02363 1371 Pfam U-box domain 993 1061 IPR003613 GO:0004842|GO:0016567
Gma19g02363 1371 PANTHER CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED 3 872 IPR008081 GO:0030833|GO:0031267
Gma19g02363 1371 SUPERFAMILY ARM repeat 1084 1361 IPR016024 -
Gma19g02363 1371 Pfam Cytoplasmic Fragile-X interacting family 22 859 IPR008081 GO:0030833|GO:0031267
Gma19g02363 1371 SMART Ubox_2 995 1058 IPR003613 GO:0004842|GO:0016567
Gma19g02363 1371 SUPERFAMILY RING/U-box 990 1068 - -
Gma19g02363 1371 CDD RING-Ubox_PUB 996 1038 IPR045210 -
Gma19g02363 1371 Gene3D - 1084 1368 IPR011989 -
Gma19g02363 1371 PANTHER CYTOPLASMIC FMR1-INTERACTING PROTEIN 2 3 872 - -
Gma19g02363 1371 ProSiteProfiles U-box domain profile. 991 1065 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g02363 Gma-Chr19 52237980 52257792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g02363 1054 1371 U-box Gene Family AT3G07360 58.282 8.16e-111 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g02363 K05749 - gmx:100775991 1793.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02363 19 52237980 52257792 Gma03g02322 03 48480228 48481874 GST